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G0JKR3 (G0JKR3_9GAMM) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length1138 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G0JKR3 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: 99957983556531BA

FASTA1,138128,957
        10         20         30         40         50         60 
MTAEKTEAGA APDTAAVASA GGDTLWYKDA ILYELHVRTF QDSNGDGIGD FPGLTSRLDY 

        70         80         90        100        110        120 
LQDLGVNTLW LLPFYPSPLR DDGYDISDYR GIHPDYGTLD DFRHFLHEAH RRGLKVITEL 

       130        140        150        160        170        180 
VINHSSDQHP WFQAARRAPP GSAKRNYYVW SDTDKKFPET RIIFSDSERS NWAWDDVAKA 

       190        200        210        220        230        240 
YYWHRFFSHQ PDLNHNNPQV VKAMIRVLRY WLDMGVDGLR LDAIPYLCVR AGTDNENLPE 

       250        260        270        280        290        300 
THAVIRQIRS AVDAHYRDRV LLAEANQWPE DVREYFGQGD ECQMAYHFPL MPRVYMSLAL 

       310        320        330        340        350        360 
EDRHPITDIL RQTPDIPENC QWAIFLRNHD ELTLEMVTRQ ERDYLYREYA ADPRMRLNLG 

       370        380        390        400        410        420 
IRRRLAPLLG NDRQKIKLLT WLLMSMPGSP IVYYGDEIGM GDNIYLGDRN GVRTPMQWSP 

       430        440        450        460        470        480 
DYNGGFSRAD PEQLYLPLLM DPVYGYQAVN VESQSRNASS LLHWTRKVIA VRKEHPAFGR 

       490        500        510        520        530        540 
GNIRFLRPGN RKMLAYLREY AGVSVLCVAN LARTAQAVEL GLEAYAGRTP VELMGKSAFP 

       550        560        570        580        590        600 
PIGQLPYLLT LPAYAFLAFA LAEDTTPPAW HEERLARPEL PALVLLEGWR TFLSLDGEAS 

       610        620        630        640        650        660 
DIRRALAART RRQLQEEVLT PYLRGKHWAA DDRETVPTVV VEIEDEWRAP GGQQGWLWMI 

       670        680        690        700        710        720 
IQIPGTDGEN RHYSLPLAIA WEDEQENLMD TFHTWILARV RQRERLGVLL DAFGDDAFCR 

       730        740        750        760        770        780 
TLVRSMDTGG EHPFAGGILA FEKSAAWDFS ESDLNTLQRP SLEQRHNNIL FGEQLYLKGY 

       790        800        810        820        830        840 
RHLQAGGDPE FEVGVFLTEV SPYTHMAPVL GRVEFRPAQG DALALALLRR YVENQGDAWT 

       850        860        870        880        890        900 
FSVEYLERTL TERMTAAVPG ADASPQRENG HALYRLRMAT LGRRVAELHR ALEQPGGDQA 

       910        920        930        940        950        960 
FDPEPFTAED LAQWVDHTAQ VAAKAAAALE EALPDLPEGL RQNAQDWLAA QARIPERLAT 

       970        980        990       1000       1010       1020 
WRHLPLPATL TRIRCPGHLG LAQVLLVDED FILINLGGDP RLSPVQRRHK QSPLLDLAAM 

      1030       1040       1050       1060       1070       1080 
RLSLMAAALA ALRRLSARAG DDLPQLREWA RTWAKQSLDA FAQAYDEIAT GAAFYPADLS 

      1090       1100       1110       1120       1130 
LREKLLELAL WERLLGDIPE LLEPLQEDIL GGTLRILLAA METASEQTPD AAIWAGLT 

« Hide

References

[1]"Draft Genome of the Psychrotolerant Acidophile Acidithiobacillus ferrivorans SS3."
Liljeqvist M., Valdes J., Holmes D.S., Dopson M.
J. Bacteriol. 193:4304-4305(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: SS3 EMBL AEM46809.1.
[2]US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Liljeqvist M. expand/collapse author list , Valdes J., Holmes D., Dopson M., Woyke T.
Submitted (AUG-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: SS3 EMBL AEM46809.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002985 Genomic DNA. Translation: AEM46809.1.
RefSeqYP_004783135.1. NC_015942.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEM46809; AEM46809; Acife_0606.
GeneID11044033.
KEGGafi:Acife_0606.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK05343.

Enzyme and pathway databases

BioCycAFER743299:GH39-614-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012810. TreS/a-amylase_N.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
TIGRFAMsTIGR02456. treS_nterm. 1 hit.
ProtoNetSearch...

Entry information

Entry nameG0JKR3_9GAMM
AccessionPrimary (citable) accession number: G0JKR3
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: January 22, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)