G0J796 (G0J796_CYCMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL AEL27729.1

Gene names

Ordered Locus Names:

Cycma_4021 EMBL AEL27729.1

Organism

Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus marinus) [Complete proteome] [HAMAP]

Taxonomic identifier

880070 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Cytophagia › Cytophagales › Cyclobacteriaceae › Cyclobacterium › Cyclobacterium marinum

Protein attributes

Sequence length	538 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEL27729.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G0J796 [UniParc]. Last modified October 19, 2011. Version 1. Checksum: 0E93994AD57FD27E	FASTA	538	62,435
	10 20 30 40 50 60 MKDFVRLFIQ LDQTTKTLKK VAALVEYFDN AEESDKLWTI AILSHKRPKR TVRTSLLRSW 70 80 90 100 110 120 AASAANVPLW LFEESYHIVG DLAETMALMH PNLISKHNKS LSEWISFIIN LKNLEDDHTI 130 140 150 160 170 180 ESANLETKRQ KVLWAWDQLD ETERFVFNKL MTGSWRVGVS QKLMTRALAQ HSGINENTLS 190 200 210 220 230 240 HRLMGNWSAE TSSYHQLIIE TDPADKISQP YPFYLAYGLE NEIHELGKPK DWLAERKWDG 250 260 270 280 290 300 IRGQLIIREN QLFLWSRGEE LITDKFPEFE ILIEKLPNGT VIDGEIIAYQ LDQPLGFNVL 310 320 330 340 350 360 QSRIGRKNVS KNILDKAPVV MIAYDLLELN GKDIRESPLH YRRQELEKLV KQGASEKLLI 370 380 390 400 410 420 SEVVQFNEWE DLIKERADSR IYHAEGLMLK SKFGTYKVGR KKGDWWKWKI DPLTIDAVLL 430 440 450 460 470 480 YAMRGHGRRA NLYTDYTFAV WKGNELVPFA KAYSGLTDKE INEVDAFVKR NTIERFGPVR 490 500 510 520 530 SVKPALVFEI AFEGIARSSR HKSGVALRFP RMHRWRKDKP VHEANTLEDL ELLLNLYG

References

[1]

"The complete genome of Cyclobacterium marinum DSM 745." Lucas S., Han J., Lapidus A., Bruce D., Goodwin L., Pitluck S., Peters L., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Chertkov O., Detter J.C., Tapia R., Han C., Land M., Hauser L., Markowitz V. , Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindall B., Schuetze A., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (JUL-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25205 / DSM 745.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002955 Genomic DNA. Translation: AEL27729.1.
RefSeq	YP_004775960.1. NC_015914.1.
3D structure databases
ProteinModelPortal	G0J796.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEL27729; AEL27729; Cycma_4021.
GeneID	11036071.
KEGG	cmr:Cycma_4021.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	CMAR880070:GHDK-4066-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G0J796_CYCMS

Accession

Primary (citable) accession number: G0J796

Entry history

Integrated into UniProtKB/TrEMBL:	October 19, 2011
Last sequence update:	October 19, 2011
Last modified:	May 29, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)