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G0IY51

- G0IY51_CYCMS

UniProt

G0IY51 - G0IY51_CYCMS

Protein
Submitted name:

DNA ligase D

Gene

Cycma_1183

Organism
Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus marinus)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciCMAR880070:GHDK-1191-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Cycma_1183Imported
    OrganismiCyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus marinus)Imported
    Taxonomic identifieri880070 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCyclobacteriaceaeCyclobacterium
    ProteomesiUP000001635: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliG0IY51.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiDWTIRSI.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G0IY51-1 [UniParc]FASTAAdd to Basket

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    MGLKAYREKR SFNDTSEPKG VVENTHQFRF VVQRHRARKL HYDLRLEIDG    50
    VLKSWAVPKG PSMNPRDKRL AVQTEDHPVA YLSFEGLIPK GNYGAGKMTI 100
    WDEGNFQSLQ QPNDLCKDHK KGKLKIIFHG SKLKGIFTLV RSSSMNKKDQ 150
    WLLIKHDDAF ATDLDYDAED FNEEAFSSGP GENSKKLDLK SLIKPMLASP 200
    GTKIFNDKDW IYELKYDGYR AIANIRNDKV ELYSRNGISL NEKFQPIYKE 250
    LKKIEHTAIL DGEIVVLDKN GLPQFNSLQN YDKQSTKGRL VYYVFDLLHL 300
    NDHDTLGLPL IDRKQLLKDL IPENTHIRYC DHVETMGITV YDRAIDMGME 350
    GVIAKKANST YDLNSRSANW LKFKKIENTE TIICGYTLSN KKSRKFGSLI 400
    LGMVEEGQLT YVGTCGTGFS EEQLTEMYFK FEVLKTKNPV FNIRKHLKGR 450
    EAVWLIPKLI CEVKFSEWTS SKVMRHPVFL RLREDKNLNF EPNQIPLKKT 500
    ASKKTGEDAF SLKVDDIMVS ITHPEKSYWP ESGYTKYDLL DYYIQMSDLI 550
    LPYLKDRPES LHRHPSGIHG ESFYQKDHEH LPEWIDTHGI HSSSSDKEIN 600
    YLLCQQKATL LYLNNLGCIE LHPWHSTIYQ LDYPDYAILD LDPSEENTFE 650
    EVMETALATK EILKQANIKG YCKTSGSSGL HIYLPMGGKY TYEEARNFTK 700
    LLCYFIQEKL PKLTTLERSL KKRGPKIYLD YLQNRKGQTI VAPYSLRPRL 750
    HAPVSMPLLW SELKPGLKIT DFTIKTVPKL MEDRKDSFKP VLGKAIDMSS 800
    AIAHLNNL 808
    Length:808
    Mass (Da):93,174
    Last modified:October 19, 2011 - v1
    Checksum:iCA01958AEA058DC1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002955 Genomic DNA. Translation: AEL24955.1.
    RefSeqiYP_004773186.1. NC_015914.1.

    Genome annotation databases

    EnsemblBacteriaiAEL24955; AEL24955; Cycma_1183.
    GeneIDi11037490.
    KEGGicmr:Cycma_1183.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002955 Genomic DNA. Translation: AEL24955.1 .
    RefSeqi YP_004773186.1. NC_015914.1.

    3D structure databases

    ProteinModelPortali G0IY51.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEL24955 ; AEL24955 ; Cycma_1183 .
    GeneIDi 11037490.
    KEGGi cmr:Cycma_1183.

    Phylogenomic databases

    KOi K01971.
    OMAi DWTIRSI.

    Enzyme and pathway databases

    BioCyci CMAR880070:GHDK-1191-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 25205 / DSM 745Imported.

    Entry informationi

    Entry nameiG0IY51_CYCMS
    AccessioniPrimary (citable) accession number: G0IY51
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3