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Protein
Submitted name:

DNA ligase D

Gene

Cycma_1183

Organism
Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus marinus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCMAR880070:GHDK-1191-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Cycma_1183Imported
OrganismiCyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus marinus)Imported
Taxonomic identifieri880070 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCyclobacteriaceaeCyclobacterium
ProteomesiUP000001635 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi880070.Cycma_1183.

Structurei

3D structure databases

ProteinModelPortaliG0IY51.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiDWTIRSI.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G0IY51-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLKAYREKR SFNDTSEPKG VVENTHQFRF VVQRHRARKL HYDLRLEIDG
60 70 80 90 100
VLKSWAVPKG PSMNPRDKRL AVQTEDHPVA YLSFEGLIPK GNYGAGKMTI
110 120 130 140 150
WDEGNFQSLQ QPNDLCKDHK KGKLKIIFHG SKLKGIFTLV RSSSMNKKDQ
160 170 180 190 200
WLLIKHDDAF ATDLDYDAED FNEEAFSSGP GENSKKLDLK SLIKPMLASP
210 220 230 240 250
GTKIFNDKDW IYELKYDGYR AIANIRNDKV ELYSRNGISL NEKFQPIYKE
260 270 280 290 300
LKKIEHTAIL DGEIVVLDKN GLPQFNSLQN YDKQSTKGRL VYYVFDLLHL
310 320 330 340 350
NDHDTLGLPL IDRKQLLKDL IPENTHIRYC DHVETMGITV YDRAIDMGME
360 370 380 390 400
GVIAKKANST YDLNSRSANW LKFKKIENTE TIICGYTLSN KKSRKFGSLI
410 420 430 440 450
LGMVEEGQLT YVGTCGTGFS EEQLTEMYFK FEVLKTKNPV FNIRKHLKGR
460 470 480 490 500
EAVWLIPKLI CEVKFSEWTS SKVMRHPVFL RLREDKNLNF EPNQIPLKKT
510 520 530 540 550
ASKKTGEDAF SLKVDDIMVS ITHPEKSYWP ESGYTKYDLL DYYIQMSDLI
560 570 580 590 600
LPYLKDRPES LHRHPSGIHG ESFYQKDHEH LPEWIDTHGI HSSSSDKEIN
610 620 630 640 650
YLLCQQKATL LYLNNLGCIE LHPWHSTIYQ LDYPDYAILD LDPSEENTFE
660 670 680 690 700
EVMETALATK EILKQANIKG YCKTSGSSGL HIYLPMGGKY TYEEARNFTK
710 720 730 740 750
LLCYFIQEKL PKLTTLERSL KKRGPKIYLD YLQNRKGQTI VAPYSLRPRL
760 770 780 790 800
HAPVSMPLLW SELKPGLKIT DFTIKTVPKL MEDRKDSFKP VLGKAIDMSS

AIAHLNNL
Length:808
Mass (Da):93,174
Last modified:October 19, 2011 - v1
Checksum:iCA01958AEA058DC1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002955 Genomic DNA. Translation: AEL24955.1.
RefSeqiWP_014019252.1. NC_015914.1.
YP_004773186.1. NC_015914.1.

Genome annotation databases

EnsemblBacteriaiAEL24955; AEL24955; Cycma_1183.
KEGGicmr:Cycma_1183.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002955 Genomic DNA. Translation: AEL24955.1.
RefSeqiWP_014019252.1. NC_015914.1.
YP_004773186.1. NC_015914.1.

3D structure databases

ProteinModelPortaliG0IY51.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi880070.Cycma_1183.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEL24955; AEL24955; Cycma_1183.
KEGGicmr:Cycma_1183.

Phylogenomic databases

KOiK01971.
OMAiDWTIRSI.

Enzyme and pathway databases

BioCyciCMAR880070:GHDK-1191-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25205 / DSM 745Imported.

Entry informationi

Entry nameiG0IY51_CYCMS
AccessioniPrimary (citable) accession number: G0IY51
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: June 24, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.