G0IY51 (G0IY51_CYCMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL AEL24955.1

Gene names

Ordered Locus Names:

Cycma_1183 EMBL AEL24955.1

Organism

Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus marinus) [Complete proteome] [HAMAP]

Taxonomic identifier

880070 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Cytophagia › Cytophagales › Cyclobacteriaceae › Cyclobacterium › Cyclobacterium marinum

Protein attributes

Sequence length	808 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEL24955.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G0IY51 [UniParc]. Last modified October 19, 2011. Version 1. Checksum: CA01958AEA058DC1	FASTA	808	93,174
	10 20 30 40 50 60 MGLKAYREKR SFNDTSEPKG VVENTHQFRF VVQRHRARKL HYDLRLEIDG VLKSWAVPKG 70 80 90 100 110 120 PSMNPRDKRL AVQTEDHPVA YLSFEGLIPK GNYGAGKMTI WDEGNFQSLQ QPNDLCKDHK 130 140 150 160 170 180 KGKLKIIFHG SKLKGIFTLV RSSSMNKKDQ WLLIKHDDAF ATDLDYDAED FNEEAFSSGP 190 200 210 220 230 240 GENSKKLDLK SLIKPMLASP GTKIFNDKDW IYELKYDGYR AIANIRNDKV ELYSRNGISL 250 260 270 280 290 300 NEKFQPIYKE LKKIEHTAIL DGEIVVLDKN GLPQFNSLQN YDKQSTKGRL VYYVFDLLHL 310 320 330 340 350 360 NDHDTLGLPL IDRKQLLKDL IPENTHIRYC DHVETMGITV YDRAIDMGME GVIAKKANST 370 380 390 400 410 420 YDLNSRSANW LKFKKIENTE TIICGYTLSN KKSRKFGSLI LGMVEEGQLT YVGTCGTGFS 430 440 450 460 470 480 EEQLTEMYFK FEVLKTKNPV FNIRKHLKGR EAVWLIPKLI CEVKFSEWTS SKVMRHPVFL 490 500 510 520 530 540 RLREDKNLNF EPNQIPLKKT ASKKTGEDAF SLKVDDIMVS ITHPEKSYWP ESGYTKYDLL 550 560 570 580 590 600 DYYIQMSDLI LPYLKDRPES LHRHPSGIHG ESFYQKDHEH LPEWIDTHGI HSSSSDKEIN 610 620 630 640 650 660 YLLCQQKATL LYLNNLGCIE LHPWHSTIYQ LDYPDYAILD LDPSEENTFE EVMETALATK 670 680 690 700 710 720 EILKQANIKG YCKTSGSSGL HIYLPMGGKY TYEEARNFTK LLCYFIQEKL PKLTTLERSL 730 740 750 760 770 780 KKRGPKIYLD YLQNRKGQTI VAPYSLRPRL HAPVSMPLLW SELKPGLKIT DFTIKTVPKL 790 800 MEDRKDSFKP VLGKAIDMSS AIAHLNNL

References

[1]

"The complete genome of Cyclobacterium marinum DSM 745." Lucas S., Han J., Lapidus A., Bruce D., Goodwin L., Pitluck S., Peters L., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Chertkov O., Detter J.C., Tapia R., Han C., Land M., Hauser L., Markowitz V. , Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindall B., Schuetze A., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (JUL-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25205 / DSM 745.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002955 Genomic DNA. Translation: AEL24955.1.
RefSeq	YP_004773186.1. NC_015914.1.
3D structure databases
ProteinModelPortal	G0IY51.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEL24955; AEL24955; Cycma_1183.
GeneID	11037490.
KEGG	cmr:Cycma_1183.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	CMAR880070:GHDK-1191-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G0IY51_CYCMS

Accession

Primary (citable) accession number: G0IY51

Entry history

Integrated into UniProtKB/TrEMBL:	October 19, 2011
Last sequence update:	October 19, 2011
Last modified:	April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)