G0IUR2 (G0IUR2_CYCMS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL AEL25454.1

Gene names

Ordered Locus Names:

Cycma_1700 EMBL AEL25454.1

Organism

Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus marinus) [Complete proteome] [HAMAP]

Taxonomic identifier

880070 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Cytophagia › Cytophagales › Cyclobacteriaceae › Cyclobacterium › Cyclobacterium marinum

Protein attributes

Sequence length	823 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. SAAS SAAS011079

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS011079
Molecular function	Isomerase SAAS SAAS011079
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	alanine metabolic process Inferred from electronic annotation. Source: InterPro biosynthetic process Inferred from electronic annotation. Source: InterPro cell division Inferred from electronic annotation. Source: InterPro regulation of cell shape Inferred from electronic annotation. Source: InterPro
Cellular_component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity Inferred from electronic annotation. Source: InterPro alanine racemase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G0IUR2 [UniParc]. Last modified October 19, 2011. Version 1. Checksum: 85365B6FC40B9279	FASTA	823	91,253
	10 20 30 40 50 60 MQQINFSQFA SNQSSLFIPG TPDESILFAV IDSRKIHSGK ETLFIALQGS RHAGWEFATD 70 80 90 100 110 120 AYAKGVRNFI LPKICPSSLL KKLANANILL SISPLKELQQ LAQINREAFR GAVIGITGSN 130 140 150 160 170 180 GKTIVKEWLA QVLSAQFNLW KSPKSYNSQI GVALSALGIN PQHQLAILEA GISAPDEMKA 190 200 210 220 230 240 LQEIIQPQLG IFTNIGSAHD ENFKDTTSKI IEKCLLFKDV KFLVYNKDQE LVSNYLASSF 250 260 270 280 290 300 DPSVRISWSD KPGADYVLSV KPHRNGTKIY MMGKDLRTFT FYTSFRDKAS LENLRHVITA 310 320 330 340 350 360 ALSLGMEPLM IQQGLELLHA VDMRLTLKSG LNGCKLIDDS YNNDLAGLEL ALEFMHQQVT 370 380 390 400 410 420 TSGRKILILS EIQQDGDITA TFKKIAWLLG QYDIDLFIGV GKGFEESKAL FPCESRCFED 430 440 450 460 470 480 TDSLLKGMET LSLSNDLILI KGARVYKFER IVQKLEALAH ETILEINLNA LRHNFMHYRQ 490 500 510 520 530 540 KLKVGTKIMV MVKAFAYGGG AAEIGNYLQE IGADYLSVAY TDEGIFLRNN GISLPIMVMN 550 560 570 580 590 600 PGSFHLDLLQ THALEPVVYN LQQLRTLSAS IDDYSGELPV HLEFDTGMRR LGMTEEDLDE 610 620 630 640 650 660 VIEILLHNKK IKVAGIFTHL AGADEAIHKD YTLSQLASFE IWSKKLMDNT GCRPLRHCLN 670 680 690 700 710 720 SAGIIRYPEY AHDMVRLGIG LYGIEVNKME QNKLEPAMVL KTVVSQVKTL AKGATVGYGR 730 740 750 760 770 780 VGKMKTEGEV ATLAIGYADG YDRRFSNGNA KVLIKGKLVP ILGNVCMDMC MADVTGLNVC 790 800 810 820 VGDEAILFGE QPSIIDLADK IGTIPYELLT GIGPRVKRQY VLD

References

[1]

"The complete genome of Cyclobacterium marinum DSM 745." Lucas S., Han J., Lapidus A., Bruce D., Goodwin L., Pitluck S., Peters L., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Chertkov O., Detter J.C., Tapia R., Han C., Land M., Hauser L., Markowitz V. , Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindall B., Schuetze A., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (JUL-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25205 / DSM 745.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002955 Genomic DNA. Translation: AEL25454.1.
RefSeq	YP_004773685.1. NC_015914.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEL25454; AEL25454; Cycma_1700.
GeneID	11034127.
KEGG	cmr:Cycma_1700.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01775.
Enzyme and pathway databases
BioCyc	CMAR880070:GHDK-1709-MONOMER.
Family and domain databases
Gene3D	2.40.37.10. 1 hit. 3.40.1190.10. 1 hit. 3.90.190.20. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR004101. Mur_ligase_C. IPR013221. Mur_ligase_cen. IPR000713. Mur_ligase_N. IPR005863. UDP-N-AcMur-pentapeptide_synth. [Graphical view]
PANTHER	PTHR23135:SF3. PTHR23135:SF3. 1 hit.
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. PF01225. Mur_ligase. 1 hit. PF08245. Mur_ligase_M. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF53244. Mur_ligase_C. 1 hit. SSF53623. Mur_ligase_cen. 1 hit. SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

G0IUR2_CYCMS

Accession

Primary (citable) accession number: G0IUR2

Entry history

Integrated into UniProtKB/TrEMBL:	October 19, 2011
Last sequence update:	October 19, 2011
Last modified:	April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)