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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Bacillus amyloliquefaciens XH7
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBAMY1034836:GL8J-2175-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ligDImported
ORF Names:BAXH7_02135Imported
OrganismiBacillus amyloliquefaciens XH7Imported
Taxonomic identifieri1034836 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001437: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG0ING5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G0ING5-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MVLTMQPILT SAPPTGSEWR YEVKYDGFRC LLRIDESGVT LTSRNGQTLT
60 70 80 90 100
NQFPEITAFA VLCFQHMKDR FPITLDGELV YLVNPYRADF EHIQIRGRLK
110 120 130 140 150
RAEAIENIAN KRPCRFLAFD LLVLKGAATV SLPYVKRKHA LFKLFEEANL
160 170 180 190 200
PLSPRHLAEE AIQYIPEHTD FEALWDKVVR YDGEGIVAKR VSSGWAENKR
210 220 230 240 250
SPDWQKYKHM KTAHVLLTGF NPKNGYVTAS VLKDGTAVPV ASVSHGMQAE
260 270 280 290 300
EKNAVRTIME THGKKLKNGE YSLEPSICMT VQYLTILQDT LREVSFVSFQ
310 320 330 340 350
FGMDWTECTY QQLILRSKTL PPELQFTSLD KVVFKKREKT KEDFLCYMVK
360 370 380 390 400
MSDVLLPFLK DRAVTVIRYP HGAPGESFFQ KNKPDYTPDF VSSVFDGSHE
410 420 430 440 450
HIVCNSIPSL LWLANQLALE FHVPFQTVHS KRPAEIVIDL DPPSRNDFPM
460 470 480 490 500
AVEAAHVLKE LFDSFSITSF PKLSGNKGIQ LYIPLSPEAF TYEETRAFTM
510 520 530 540 550
LIADYCVRTR PDLFTTERFI KNRNGRLYLD YLQHAEGKTI IAPYSTRGNE
560 570 580 590 600
LGTVAAPLYW NEVNSSLTPD DYTIDTVVNR VRTEGDPFYE FYRNPQDGPL
610
SIVLEQIKRK S
Length:611
Mass (Da):69,907
Last modified:October 19, 2011 - v1
Checksum:i66CA9807276541E3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002927 Genomic DNA. Translation: AEK89267.1.
RefSeqiWP_013352013.1. NC_017191.1.
YP_005550115.1. NC_017191.1.

Genome annotation databases

EnsemblBacteriaiAEK89267; AEK89267; BAXH7_02135.
GeneIDi12197086.
KEGGibxh:BAXH7_02135.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002927 Genomic DNA. Translation: AEK89267.1.
RefSeqiWP_013352013.1. NC_017191.1.
YP_005550115.1. NC_017191.1.

3D structure databases

ProteinModelPortaliG0ING5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEK89267; AEK89267; BAXH7_02135.
GeneIDi12197086.
KEGGibxh:BAXH7_02135.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciBAMY1034836:GL8J-2175-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of Bacillus amyloliquefaciens XH7, Which Exhibits Production of Purine Nucleosides."
    Yang H., Liao Y., Wang B., Lin Y., Pan L.
    J. Bacteriol. 193:5593-5594(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: XH7Imported.

Entry informationi

Entry nameiG0ING5_BACAM
AccessioniPrimary (citable) accession number: G0ING5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: January 7, 2015
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.