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G0G9E1

- G0G9E1_AMYMS

UniProt

G0G9E1 - G0G9E1_AMYMS

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligC

Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligCImported
    Synonyms:ligImported
    Ordered Locus Names:AMES_2641Imported, RAM_13570Imported
    OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
    Taxonomic identifieri713604 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
    ProteomesiUP000006138: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G0G9E1-1 [UniParc]FASTAAdd to Basket

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    MPLPLQPPLK PMLAKPAKAI PESGGLLFEP KWDGFRCIVF RDGDELYLQS    50
    RAEKPLNRYF PEAVARLLDT LPPRVVLDGE LVVARDGRLN FDALTERIHP 100
    AESRITLLSA EQPAEFVAFD VLALGDDLLL DEPTSVRRER LTELAGDRFP 150
    LTPATTDPAT ARHWFELFEG AGLDGVIGKP LDEPYTPGKR VMLKYKHLRT 200
    ADCVLAGLRW HVDGGPGELV GSFLLGLYDE KGVLHHVGTV GAFPKDRRRE 250
    LAEELAPLIT DGEDHPWGGR ATGEAQRIPG GITRWRATEH EWVPLRPERV 300
    VEVAYENTEG GMPSRFRHNA RFKRWRPDRE PASCDYSQLE EPARYDLDAV 350
    FRGQVVRTR 359
    Length:359
    Mass (Da):40,401
    Last modified:October 19, 2011 - v1
    Checksum:i8B0926AAC0413864
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK41202.1.
    CP003729 Genomic DNA. Translation: AFO76177.1.
    RefSeqiYP_005530659.1. NC_017186.1.
    YP_006549122.1. NC_018266.1.

    Genome annotation databases

    EnsemblBacteriaiAEK41202; AEK41202; RAM_13570.
    AFO76177; AFO76177; AMES_2641.
    GeneIDi12123293.
    13411701.
    KEGGiamm:AMES_2641.
    amn:RAM_13570.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK41202.1 .
    CP003729 Genomic DNA. Translation: AFO76177.1 .
    RefSeqi YP_005530659.1. NC_017186.1.
    YP_006549122.1. NC_018266.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEK41202 ; AEK41202 ; RAM_13570 .
    AFO76177 ; AFO76177 ; AMES_2641 .
    GeneIDi 12123293.
    13411701.
    KEGGi amm:AMES_2641.
    amn:RAM_13570.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
      Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
      J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    2. "Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
      Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
      J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    3. Biao T.
      Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: S699Imported.

    Entry informationi

    Entry nameiG0G9E1_AMYMS
    AccessioniPrimary (citable) accession number: G0G9E1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3