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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligC

Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligCImported
Synonyms:ligImported
Ordered Locus Names:AMES_2641Imported, RAM_13570Imported
OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
Taxonomic identifieri713604 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
ProteomesiUP000006138: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G0G9E1-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MPLPLQPPLK PMLAKPAKAI PESGGLLFEP KWDGFRCIVF RDGDELYLQS
60 70 80 90 100
RAEKPLNRYF PEAVARLLDT LPPRVVLDGE LVVARDGRLN FDALTERIHP
110 120 130 140 150
AESRITLLSA EQPAEFVAFD VLALGDDLLL DEPTSVRRER LTELAGDRFP
160 170 180 190 200
LTPATTDPAT ARHWFELFEG AGLDGVIGKP LDEPYTPGKR VMLKYKHLRT
210 220 230 240 250
ADCVLAGLRW HVDGGPGELV GSFLLGLYDE KGVLHHVGTV GAFPKDRRRE
260 270 280 290 300
LAEELAPLIT DGEDHPWGGR ATGEAQRIPG GITRWRATEH EWVPLRPERV
310 320 330 340 350
VEVAYENTEG GMPSRFRHNA RFKRWRPDRE PASCDYSQLE EPARYDLDAV

FRGQVVRTR
Length:359
Mass (Da):40,401
Last modified:October 19, 2011 - v1
Checksum:i8B0926AAC0413864
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002896 Genomic DNA. Translation: AEK41202.1.
CP003729 Genomic DNA. Translation: AFO76177.1.
RefSeqiYP_005530659.1. NC_017186.1.
YP_006549122.1. NC_018266.1.

Genome annotation databases

EnsemblBacteriaiAEK41202; AEK41202; RAM_13570.
AFO76177; AFO76177; AMES_2641.
GeneIDi12123293.
13411701.
KEGGiamm:AMES_2641.
amn:RAM_13570.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002896 Genomic DNA. Translation: AEK41202.1.
CP003729 Genomic DNA. Translation: AFO76177.1.
RefSeqiYP_005530659.1. NC_017186.1.
YP_006549122.1. NC_018266.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEK41202; AEK41202; RAM_13570.
AFO76177; AFO76177; AMES_2641.
GeneIDi12123293.
13411701.
KEGGiamm:AMES_2641.
amn:RAM_13570.

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
    Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
    J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S699Imported.
  2. "Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
    Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
    J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S699Imported.
  3. Biao T.
    Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: S699Imported.

Entry informationi

Entry nameiG0G9E1_AMYMS
AccessioniPrimary (citable) accession number: G0G9E1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: January 7, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.