G0G9E1 (G0G9E1_AMYMD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL AEK41202.1
EC=6.5.1.1 EMBL AEK41202.1

Gene names

Name:	ligC EMBL AEK41202.1
Synonyms:	lig EMBL AFO76177.1
ORF Names:	AMES_2641 EMBL AFO76177.1, RAM_13570 EMBL AEK41202.1

Organism

Amycolatopsis mediterranei S699 EMBL AEK41202.1

Taxonomic identifier

713604 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Pseudonocardineae › Pseudonocardiaceae › Amycolatopsis › Amycolatopsis mediterranei

Protein attributes

Sequence length	359 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEK41202.1
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G0G9E1 [UniParc]. Last modified October 19, 2011. Version 1. Checksum: 8B0926AAC0413864	FASTA	359	40,401
	10 20 30 40 50 60 MPLPLQPPLK PMLAKPAKAI PESGGLLFEP KWDGFRCIVF RDGDELYLQS RAEKPLNRYF 70 80 90 100 110 120 PEAVARLLDT LPPRVVLDGE LVVARDGRLN FDALTERIHP AESRITLLSA EQPAEFVAFD 130 140 150 160 170 180 VLALGDDLLL DEPTSVRRER LTELAGDRFP LTPATTDPAT ARHWFELFEG AGLDGVIGKP 190 200 210 220 230 240 LDEPYTPGKR VMLKYKHLRT ADCVLAGLRW HVDGGPGELV GSFLLGLYDE KGVLHHVGTV 250 260 270 280 290 300 GAFPKDRRRE LAEELAPLIT DGEDHPWGGR ATGEAQRIPG GITRWRATEH EWVPLRPERV 310 320 330 340 350 VEVAYENTEG GMPSRFRHNA RFKRWRPDRE PASCDYSQLE EPARYDLDAV FRGQVVRTR

References

[1]	"Whole Genome Sequence of the Rifamycin B-Producing Strain Amycolatopsis mediterranei S699." Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R. J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AEK41202.1.
[2]	"Complete Genome Sequence of Amycolatopsis mediterranei S699 Based on De Novo Assembly via a Combinatorial Sequencing Strategy." Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P. J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AFO76177.1.
[3]	Biao T. Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AFO76177.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002896 Genomic DNA. Translation: AEK41202.1. CP003729 Genomic DNA. Translation: AFO76177.1.
RefSeq	YP_005530659.1. NC_017186.1. YP_006549122.1. NC_018266.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEK41202; AEK41202; RAM_13570. AFO76177; AFO76177; AMES_2641.
GeneID	12123293. 13411701.
KEGG	amm:AMES_2641. amn:RAM_13570.
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G0G9E1_AMYMD

Accession

Primary (citable) accession number: G0G9E1

Entry history

Integrated into UniProtKB/TrEMBL:	October 19, 2011
Last sequence update:	October 19, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)