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G0FTG4

- G0FTG4_AMYMS

UniProt

G0FTG4 - G0FTG4_AMYMS

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
lig, AMES_5213, RAM_26870
Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ligImported
Ordered Locus Names:AMES_5213Imported, RAM_26870Imported
OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
Taxonomic identifieri713604 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
ProteomesiUP000006138: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

Sequencei

Sequence statusi: Complete.

G0FTG4-1 [UniParc]FASTAAdd to Basket

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MADKLEEYRG KRARDRTSEP WPDGPPAPGD NDLFVIQEHH ATRLHWDFRL    50
ERDGVLVSWA VPKGLPLSPG VPRLAVHTED HPMEYLTFSG EIPAGEYGGG 100
RMTVWDTGKY ETLHWNDHKV EVVFHGERAR GKYLFTNRHD EDDRDWTLRR 150
LDPAEPGHED APEFVEPMTA VPGELPADDD EWAYEFAWGG LRTMLLVCGG 200
RVTAHDETGA DVTARYPELH KLGEQLGSTE VLLDGEVVVV KDGKPDPDGL 250
DERRRADGAA AKRLKASCPV FYFASDVLHL EGRATLELPY TKRRELLDGL 300
PIEDRHWQVP RYYLGGGEAV AGASRQHGLP GVVAKRADSP YQPGGGPGDW 350
LLIRN 355
Length:355
Mass (Da):39,715
Last modified:October 19, 2011 - v1
Checksum:iC174075ADF45C78E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002896 Genomic DNA. Translation: AEK43851.1.
CP003729 Genomic DNA. Translation: AFO78749.1.
RefSeqiYP_005533308.1. NC_017186.1.
YP_006551693.1. NC_018266.1.

Genome annotation databases

EnsemblBacteriaiAEK43851; AEK43851; RAM_26870.
AFO78749; AFO78749; AMES_5213.
GeneIDi12119721.
13410248.
KEGGiamm:AMES_5213.
amn:RAM_26870.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002896 Genomic DNA. Translation: AEK43851.1 .
CP003729 Genomic DNA. Translation: AFO78749.1 .
RefSeqi YP_005533308.1. NC_017186.1.
YP_006551693.1. NC_018266.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEK43851 ; AEK43851 ; RAM_26870 .
AFO78749 ; AFO78749 ; AMES_5213 .
GeneIDi 12119721.
13410248.
KEGGi amm:AMES_5213.
amn:RAM_26870.

Phylogenomic databases

KOi K01971.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
    Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
    J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S699Imported.
  2. "Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
    Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
    J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S699Imported.
  3. Biao T.
    Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: S699Imported.

Entry informationi

Entry nameiG0FTG4_AMYMS
AccessioniPrimary (citable) accession number: G0FTG4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: July 9, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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