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G0FTG4 (G0FTG4_AMYMS) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length355 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEK43851.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G0FTG4 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: C174075ADF45C78E

FASTA35539,715
        10         20         30         40         50         60 
MADKLEEYRG KRARDRTSEP WPDGPPAPGD NDLFVIQEHH ATRLHWDFRL ERDGVLVSWA 

        70         80         90        100        110        120 
VPKGLPLSPG VPRLAVHTED HPMEYLTFSG EIPAGEYGGG RMTVWDTGKY ETLHWNDHKV 

       130        140        150        160        170        180 
EVVFHGERAR GKYLFTNRHD EDDRDWTLRR LDPAEPGHED APEFVEPMTA VPGELPADDD 

       190        200        210        220        230        240 
EWAYEFAWGG LRTMLLVCGG RVTAHDETGA DVTARYPELH KLGEQLGSTE VLLDGEVVVV 

       250        260        270        280        290        300 
KDGKPDPDGL DERRRADGAA AKRLKASCPV FYFASDVLHL EGRATLELPY TKRRELLDGL 

       310        320        330        340        350 
PIEDRHWQVP RYYLGGGEAV AGASRQHGLP GVVAKRADSP YQPGGGPGDW LLIRN 

« Hide

References

« Hide 'large scale' references
[1]"Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S699 EMBL AEK43851.1.
[2]"Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S699 EMBL AFO78749.1.
[3]Biao T.
Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: S699 EMBL AFO78749.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002896 Genomic DNA. Translation: AEK43851.1.
CP003729 Genomic DNA. Translation: AFO78749.1.
RefSeqYP_005533308.1. NC_017186.1.
YP_006551693.1. NC_018266.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEK43851; AEK43851; RAM_26870.
AFO78749; AFO78749; AMES_5213.
GeneID12119721.
13410248.
KEGGamm:AMES_5213.
amn:RAM_26870.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
ProtoNetSearch...

Entry information

Entry nameG0FTG4_AMYMS
AccessionPrimary (citable) accession number: G0FTG4
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: July 9, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)