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G0FTG4

- G0FTG4_AMYMS

UniProt

G0FTG4 - G0FTG4_AMYMS

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Name:ligImported
    Ordered Locus Names:AMES_5213Imported, RAM_26870Imported
    OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
    Taxonomic identifieri713604 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
    ProteomesiUP000006138: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR014144. LigD_PE_domain.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    G0FTG4-1 [UniParc]FASTAAdd to Basket

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    MADKLEEYRG KRARDRTSEP WPDGPPAPGD NDLFVIQEHH ATRLHWDFRL    50
    ERDGVLVSWA VPKGLPLSPG VPRLAVHTED HPMEYLTFSG EIPAGEYGGG 100
    RMTVWDTGKY ETLHWNDHKV EVVFHGERAR GKYLFTNRHD EDDRDWTLRR 150
    LDPAEPGHED APEFVEPMTA VPGELPADDD EWAYEFAWGG LRTMLLVCGG 200
    RVTAHDETGA DVTARYPELH KLGEQLGSTE VLLDGEVVVV KDGKPDPDGL 250
    DERRRADGAA AKRLKASCPV FYFASDVLHL EGRATLELPY TKRRELLDGL 300
    PIEDRHWQVP RYYLGGGEAV AGASRQHGLP GVVAKRADSP YQPGGGPGDW 350
    LLIRN 355
    Length:355
    Mass (Da):39,715
    Last modified:October 19, 2011 - v1
    Checksum:iC174075ADF45C78E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK43851.1.
    CP003729 Genomic DNA. Translation: AFO78749.1.
    RefSeqiYP_005533308.1. NC_017186.1.
    YP_006551693.1. NC_018266.1.

    Genome annotation databases

    EnsemblBacteriaiAEK43851; AEK43851; RAM_26870.
    AFO78749; AFO78749; AMES_5213.
    GeneIDi12119721.
    13410248.
    KEGGiamm:AMES_5213.
    amn:RAM_26870.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK43851.1 .
    CP003729 Genomic DNA. Translation: AFO78749.1 .
    RefSeqi YP_005533308.1. NC_017186.1.
    YP_006551693.1. NC_018266.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEK43851 ; AEK43851 ; RAM_26870 .
    AFO78749 ; AFO78749 ; AMES_5213 .
    GeneIDi 12119721.
    13410248.
    KEGGi amm:AMES_5213.
    amn:RAM_26870.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014144. LigD_PE_domain.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
      Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
      J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    2. "Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
      Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
      J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    3. Biao T.
      Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: S699Imported.

    Entry informationi

    Entry nameiG0FTG4_AMYMS
    AccessioniPrimary (citable) accession number: G0FTG4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3