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G0FQR1

- G0FQR1_AMYMS

UniProt

G0FQR1 - G0FQR1_AMYMS

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Name:ligImported
    Ordered Locus Names:AMES_5142Imported, RAM_26510Imported
    OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
    Taxonomic identifieri713604 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
    ProteomesiUP000006138: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G0FQR1-1 [UniParc]FASTAAdd to Basket

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    MTGPGWREPT LATLTDRRFS DEDWIFERKL DGVRAICVRD SGTPTLYSRN    50
    HKVMDNAYPE IVEALAAQGG PRFVADGEIV AFDGANTSFA ALQPRIHVSD 100
    PDRARATGVR VYYYLFDLLY LDDRDTTALP LRQRKALLRE AFGFADPLRL 150
    SAHRNTEGEK FFEEACRRGW EGVIAKRADA PYHHGRSPDW LKFKCAQGQE 200
    FVIGGFTDPQ GARHGFGALL LGYHDDDGLR YAGKVGTGFD ERLLTSLHAR 250
    LRDRETARSP FAGPVKEPGA HWVRPELVAQ IGFSEWTRDG RLRHPRFAGL 300
    REDKKAADVV RERA 314
    Length:314
    Mass (Da):35,411
    Last modified:October 19, 2011 - v1
    Checksum:iE41D89080DA36DA7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK43779.1.
    CP003729 Genomic DNA. Translation: AFO78678.1.
    RefSeqiYP_005533236.1. NC_017186.1.
    YP_006551623.1. NC_018266.1.

    Genome annotation databases

    EnsemblBacteriaiAEK43779; AEK43779; RAM_26510.
    AFO78678; AFO78678; AMES_5142.
    GeneIDi12123930.
    13410097.
    KEGGiamm:AMES_5142.
    amn:RAM_26510.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK43779.1 .
    CP003729 Genomic DNA. Translation: AFO78678.1 .
    RefSeqi YP_005533236.1. NC_017186.1.
    YP_006551623.1. NC_018266.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEK43779 ; AEK43779 ; RAM_26510 .
    AFO78678 ; AFO78678 ; AMES_5142 .
    GeneIDi 12123930.
    13410097.
    KEGGi amm:AMES_5142.
    amn:RAM_26510.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
      Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
      J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    2. "Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
      Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
      J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    3. Biao T.
      Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: S699Imported.

    Entry informationi

    Entry nameiG0FQR1_AMYMS
    AccessioniPrimary (citable) accession number: G0FQR1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3