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G0FQR1 (G0FQR1_AMYMS) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length314 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
G0FQR1 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: E41D89080DA36DA7

FASTA31435,411
        10         20         30         40         50         60 
MTGPGWREPT LATLTDRRFS DEDWIFERKL DGVRAICVRD SGTPTLYSRN HKVMDNAYPE 

        70         80         90        100        110        120 
IVEALAAQGG PRFVADGEIV AFDGANTSFA ALQPRIHVSD PDRARATGVR VYYYLFDLLY 

       130        140        150        160        170        180 
LDDRDTTALP LRQRKALLRE AFGFADPLRL SAHRNTEGEK FFEEACRRGW EGVIAKRADA 

       190        200        210        220        230        240 
PYHHGRSPDW LKFKCAQGQE FVIGGFTDPQ GARHGFGALL LGYHDDDGLR YAGKVGTGFD 

       250        260        270        280        290        300 
ERLLTSLHAR LRDRETARSP FAGPVKEPGA HWVRPELVAQ IGFSEWTRDG RLRHPRFAGL 

       310 
REDKKAADVV RERA 

« Hide

References

« Hide 'large scale' references
[1]"Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S699 EMBL AEK43779.1.
[2]"Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S699 EMBL AFO78678.1.
[3]Biao T.
Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: S699 EMBL AFO78678.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002896 Genomic DNA. Translation: AEK43779.1.
CP003729 Genomic DNA. Translation: AFO78678.1.
RefSeqYP_005533236.1. NC_017186.1.
YP_006551623.1. NC_018266.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEK43779; AEK43779; RAM_26510.
AFO78678; AFO78678; AMES_5142.
GeneID12123930.
13410097.
KEGGamm:AMES_5142.
amn:RAM_26510.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG0FQR1_AMYMS
AccessionPrimary (citable) accession number: G0FQR1
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: July 9, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)