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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ligase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ligImported
Ordered Locus Names:AMES_4139Imported, RAM_21335Imported
OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
Taxonomic identifieri713604 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
ProteomesiUP000006138: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

G0FQB4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAADPARKLR RYQEMRDFGR TAEPAGGSAG PDGHRFVVQR HRARRLHYDF
60 70 80 90 100
RLELGGVLVS WAVPKGPTLD PKARRLAVHV EDHPIEYAGF EGVIPRGEYG
110 120 130 140 150
GGDVIVWDRG VWRPVEPDPA RAIEAGTLHF DLEGEKLAGR FVLVRTSRGE
160 170 180 190 200
KDQWFLLHKQ DEHAQAGWDA EDHPRSVKSG RTNDEVAAAP DALWHGDRPA
210 220 230 240 250
AEAEESVGGW QAPTEDELAA LDALGVKGRW SVAGRELALT NLDKVLFPAA
260 270 280 290 300
GGGKPVTKRD LIRYYATVGP VMLPYLAGRP LNTHRFPQGV TEPGFWQKEV
310 320 330 340 350
PRHAPDWLTT WRNERAEPGE SRRYVVADSV ATLAWLANYG ALELHAWTSR
360 370 380 390 400
AADVDHPTWV LFDIDPGPET TFEEVLELAR LHRTALEHLG LTGRPKVTGQ
410 420 430 440 450
RGIQVWVPIA PHCTFEQTRA WAETVSRTIG RVLPDLVSWA WTKDKRRGRA
460 470 480 490 500
RLDYTQNVLN KTLVAPYSVR PRPGAPVSVP LEWAELDDPR LAPDRWTIRD
510 520
VPGRLAEHGD PFSVLLGLEQ KLPGL
Length:525
Mass (Da):58,634
Last modified:October 19, 2011 - v1
Checksum:iCF44701802AC6596
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002896 Genomic DNA. Translation: AEK42747.1.
CP003729 Genomic DNA. Translation: AFO77675.1.
RefSeqiYP_005532204.1. NC_017186.1.
YP_006550620.1. NC_018266.1.

Genome annotation databases

EnsemblBacteriaiAEK42747; AEK42747; RAM_21335.
AFO77675; AFO77675; AMES_4139.
GeneIDi12124840.
13415143.
KEGGiamm:AMES_4139.
amn:RAM_21335.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002896 Genomic DNA. Translation: AEK42747.1.
CP003729 Genomic DNA. Translation: AFO77675.1.
RefSeqiYP_005532204.1. NC_017186.1.
YP_006550620.1. NC_018266.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEK42747; AEK42747; RAM_21335.
AFO77675; AFO77675; AMES_4139.
GeneIDi12124840.
13415143.
KEGGiamm:AMES_4139.
amn:RAM_21335.

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
    Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
    J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S699Imported.
  2. "Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
    Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
    J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S699Imported.
  3. Biao T.
    Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: S699Imported.

Entry informationi

Entry nameiG0FQB4_AMYMS
AccessioniPrimary (citable) accession number: G0FQB4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: January 7, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.