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G0FQB4

- G0FQB4_AMYMS

UniProt

G0FQB4 - G0FQB4_AMYMS

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ligase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Name:ligImported
    Ordered Locus Names:AMES_4139Imported, RAM_21335Imported
    OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
    Taxonomic identifieri713604 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
    ProteomesiUP000006138: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    InterProiIPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    [Graphical view]
    PfamiPF13298. LigD_N. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    G0FQB4-1 [UniParc]FASTAAdd to Basket

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    MAADPARKLR RYQEMRDFGR TAEPAGGSAG PDGHRFVVQR HRARRLHYDF    50
    RLELGGVLVS WAVPKGPTLD PKARRLAVHV EDHPIEYAGF EGVIPRGEYG 100
    GGDVIVWDRG VWRPVEPDPA RAIEAGTLHF DLEGEKLAGR FVLVRTSRGE 150
    KDQWFLLHKQ DEHAQAGWDA EDHPRSVKSG RTNDEVAAAP DALWHGDRPA 200
    AEAEESVGGW QAPTEDELAA LDALGVKGRW SVAGRELALT NLDKVLFPAA 250
    GGGKPVTKRD LIRYYATVGP VMLPYLAGRP LNTHRFPQGV TEPGFWQKEV 300
    PRHAPDWLTT WRNERAEPGE SRRYVVADSV ATLAWLANYG ALELHAWTSR 350
    AADVDHPTWV LFDIDPGPET TFEEVLELAR LHRTALEHLG LTGRPKVTGQ 400
    RGIQVWVPIA PHCTFEQTRA WAETVSRTIG RVLPDLVSWA WTKDKRRGRA 450
    RLDYTQNVLN KTLVAPYSVR PRPGAPVSVP LEWAELDDPR LAPDRWTIRD 500
    VPGRLAEHGD PFSVLLGLEQ KLPGL 525
    Length:525
    Mass (Da):58,634
    Last modified:October 19, 2011 - v1
    Checksum:iCF44701802AC6596
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK42747.1.
    CP003729 Genomic DNA. Translation: AFO77675.1.
    RefSeqiYP_005532204.1. NC_017186.1.
    YP_006550620.1. NC_018266.1.

    Genome annotation databases

    EnsemblBacteriaiAEK42747; AEK42747; RAM_21335.
    AFO77675; AFO77675; AMES_4139.
    GeneIDi12124840.
    13415143.
    KEGGiamm:AMES_4139.
    amn:RAM_21335.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK42747.1 .
    CP003729 Genomic DNA. Translation: AFO77675.1 .
    RefSeqi YP_005532204.1. NC_017186.1.
    YP_006550620.1. NC_018266.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEK42747 ; AEK42747 ; RAM_21335 .
    AFO77675 ; AFO77675 ; AMES_4139 .
    GeneIDi 12124840.
    13415143.
    KEGGi amm:AMES_4139.
    amn:RAM_21335.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    InterProi IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    [Graphical view ]
    Pfami PF13298. LigD_N. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
      Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
      J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    2. "Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
      Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
      J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    3. Biao T.
      Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: S699Imported.

    Entry informationi

    Entry nameiG0FQB4_AMYMS
    AccessioniPrimary (citable) accession number: G0FQB4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3