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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
  2. ligase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ligImported
Ordered Locus Names:AMES_4101Imported, RAM_21135Imported
OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
Taxonomic identifieri713604 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
ProteomesiUP000006138 Componenti: Chromosome

Family & Domainsi

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

G0FQ74-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGAVLLDVD GVEVKISSPD KVYFPERGET KLDLVEYYRA ISGPLLARLG
60 70 80 90 100
GRPLLLERYP DGAGGKNWFQ KRVPKGTPPW LTTTVVSTPN GTTSDALVAK
110 120 130 140 150
DLAHLLWAVN LGCLGFHVWP YLADTPEVTD ELRVDLDPSP GIGFDELREA
160 170 180 190 200
AVLTREFLAE HGIEGHLKTS GSRGLHLYVL LEPRWDSFQV RAAAVALARA
210 220 230 240 250
LERRHPEKIT AQWWKEERGS RVFVDFNQNA PHKTVFGTWC VRPRVGGQVS
260 270 280 290 300
TPIGWDELDT VEPDTLTLST VPARVAERGD PWAGAGERPQ SIEPLLAMSE
310 320 330
RDMADGLMDA PWPPVYPKMP NEPPRVAPSR AKKA
Length:334
Mass (Da):36,920
Last modified:October 18, 2011 - v1
Checksum:i5764DCC71A33103B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002896 Genomic DNA. Translation: AEK42707.1.
CP003729 Genomic DNA. Translation: AFO77637.1.
RefSeqiYP_005532164.1. NC_017186.1.
YP_006550582.1. NC_018266.1.

Genome annotation databases

EnsemblBacteriaiAEK42707; AEK42707; RAM_21135.
AFO77637; AFO77637; AMES_4101.
KEGGiamm:AMES_4101.
amn:RAM_21135.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002896 Genomic DNA. Translation: AEK42707.1.
CP003729 Genomic DNA. Translation: AFO77637.1.
RefSeqiYP_005532164.1. NC_017186.1.
YP_006550582.1. NC_018266.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEK42707; AEK42707; RAM_21135.
AFO77637; AFO77637; AMES_4101.
KEGGiamm:AMES_4101.
amn:RAM_21135.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
    Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
    J. Bacteriol. 193:5562-5563(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S699Imported.
  2. "Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
    Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
    J. Bacteriol. 194:5699-5700(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S699Imported.
  3. Biao T.
    Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: S699Imported.

Entry informationi

Entry nameiG0FQ74_AMYMS
AccessioniPrimary (citable) accession number: G0FQ74
Entry historyi
Integrated into UniProtKB/TrEMBL: October 18, 2011
Last sequence update: October 18, 2011
Last modified: March 31, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.