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G0FQ73

- G0FQ73_AMYMS

UniProt

G0FQ73 - G0FQ73_AMYMS

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligC

Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligCImported
    Synonyms:ligImported
    Ordered Locus Names:AMES_4100Imported, RAM_21130Imported
    OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
    Taxonomic identifieri713604 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
    ProteomesiUP000006138: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G0FQ73-1 [UniParc]FASTAAdd to Basket

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    MPPVRPMLAK AVHEVPRDPG LLYEPKWDGF RCVVFRDGDE IELGSRNDRP    50
    LTRYFPELVE LLAAALPPRC VVDGEIVLVT PAGLDFEVLQ LRLHPAASRV 100
    RKLAEETPAS FIAFDLLALG DTDLTEEPFR ERRKQLESVL STAAEGLQRV 150
    HLTPLSDDPA QAEDWFTRFE GAGFDGVMAK PGDLPYEQDK RVMLKVKHER 200
    TADCVVTGFR WHKDGAGVGS LLLGLFDDEG VLHHVGVASS FTKARRAELV 250
    DELAPLRENA LEGHPWRNWA EYEPQPGRQP GANSRWAPQK DLSWEPLRPE 300
    WVAEVRYEHL QGGRFRHGGR LVRFRPDRTP ESCTYAQLDE APPAELAKLL 350
    GEAR 354
    Length:354
    Mass (Da):39,853
    Last modified:October 19, 2011 - v1
    Checksum:i836C1C906AD7ED23
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK42706.1.
    CP003729 Genomic DNA. Translation: AFO77636.1.
    RefSeqiYP_005532163.1. NC_017186.1.
    YP_006550581.1. NC_018266.1.

    Genome annotation databases

    EnsemblBacteriaiAEK42706; AEK42706; RAM_21130.
    AFO77636; AFO77636; AMES_4100.
    GeneIDi12124799.
    13415104.
    KEGGiamm:AMES_4100.
    amn:RAM_21130.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK42706.1 .
    CP003729 Genomic DNA. Translation: AFO77636.1 .
    RefSeqi YP_005532163.1. NC_017186.1.
    YP_006550581.1. NC_018266.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEK42706 ; AEK42706 ; RAM_21130 .
    AFO77636 ; AFO77636 ; AMES_4100 .
    GeneIDi 12124799.
    13415104.
    KEGGi amm:AMES_4100.
    amn:RAM_21130.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
      Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
      J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    2. "Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
      Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
      J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    3. Biao T.
      Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: S699Imported.

    Entry informationi

    Entry nameiG0FQ73_AMYMS
    AccessioniPrimary (citable) accession number: G0FQ73
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3