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G0FQ73 (G0FQ73_AMYMS) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length354 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEK42706.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G0FQ73 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: 836C1C906AD7ED23

FASTA35439,853
        10         20         30         40         50         60 
MPPVRPMLAK AVHEVPRDPG LLYEPKWDGF RCVVFRDGDE IELGSRNDRP LTRYFPELVE 

        70         80         90        100        110        120 
LLAAALPPRC VVDGEIVLVT PAGLDFEVLQ LRLHPAASRV RKLAEETPAS FIAFDLLALG 

       130        140        150        160        170        180 
DTDLTEEPFR ERRKQLESVL STAAEGLQRV HLTPLSDDPA QAEDWFTRFE GAGFDGVMAK 

       190        200        210        220        230        240 
PGDLPYEQDK RVMLKVKHER TADCVVTGFR WHKDGAGVGS LLLGLFDDEG VLHHVGVASS 

       250        260        270        280        290        300 
FTKARRAELV DELAPLRENA LEGHPWRNWA EYEPQPGRQP GANSRWAPQK DLSWEPLRPE 

       310        320        330        340        350 
WVAEVRYEHL QGGRFRHGGR LVRFRPDRTP ESCTYAQLDE APPAELAKLL GEAR 

« Hide

References

« Hide 'large scale' references
[1]"Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S699 EMBL AEK42706.1.
[2]"Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S699 EMBL AFO77636.1.
[3]Biao T.
Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: S699 EMBL AFO77636.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002896 Genomic DNA. Translation: AEK42706.1.
CP003729 Genomic DNA. Translation: AFO77636.1.
RefSeqYP_005532163.1. NC_017186.1.
YP_006550581.1. NC_018266.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEK42706; AEK42706; RAM_21130.
AFO77636; AFO77636; AMES_4100.
GeneID12124799.
13415104.
KEGGamm:AMES_4100.
amn:RAM_21130.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG0FQ73_AMYMS
AccessionPrimary (citable) accession number: G0FQ73
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: July 9, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)