G0FQ73 (G0FQ73_AMYMD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL AEK42706.1
EC=6.5.1.1 EMBL AEK42706.1

Gene names

Name:	ligC EMBL AEK42706.1
Synonyms:	lig EMBL AFO77636.1
ORF Names:	AMES_4100 EMBL AFO77636.1, RAM_21130 EMBL AEK42706.1

Organism

Amycolatopsis mediterranei S699 EMBL AEK42706.1

Taxonomic identifier

713604 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Pseudonocardineae › Pseudonocardiaceae › Amycolatopsis › Amycolatopsis mediterranei

Protein attributes

Sequence length	354 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEK42706.1
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G0FQ73 [UniParc]. Last modified October 19, 2011. Version 1. Checksum: 836C1C906AD7ED23	FASTA	354	39,853
	10 20 30 40 50 60 MPPVRPMLAK AVHEVPRDPG LLYEPKWDGF RCVVFRDGDE IELGSRNDRP LTRYFPELVE 70 80 90 100 110 120 LLAAALPPRC VVDGEIVLVT PAGLDFEVLQ LRLHPAASRV RKLAEETPAS FIAFDLLALG 130 140 150 160 170 180 DTDLTEEPFR ERRKQLESVL STAAEGLQRV HLTPLSDDPA QAEDWFTRFE GAGFDGVMAK 190 200 210 220 230 240 PGDLPYEQDK RVMLKVKHER TADCVVTGFR WHKDGAGVGS LLLGLFDDEG VLHHVGVASS 250 260 270 280 290 300 FTKARRAELV DELAPLRENA LEGHPWRNWA EYEPQPGRQP GANSRWAPQK DLSWEPLRPE 310 320 330 340 350 WVAEVRYEHL QGGRFRHGGR LVRFRPDRTP ESCTYAQLDE APPAELAKLL GEAR

References

[1]	"Whole Genome Sequence of the Rifamycin B-Producing Strain Amycolatopsis mediterranei S699." Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R. J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AEK42706.1.
[2]	"Complete Genome Sequence of Amycolatopsis mediterranei S699 Based on De Novo Assembly via a Combinatorial Sequencing Strategy." Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P. J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AFO77636.1.
[3]	Biao T. Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AFO77636.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002896 Genomic DNA. Translation: AEK42706.1. CP003729 Genomic DNA. Translation: AFO77636.1.
RefSeq	YP_005532163.1. NC_017186.1. YP_006550581.1. NC_018266.1.
3D structure databases
ProteinModelPortal	G0FQ73.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEK42706; AEK42706; RAM_21130. AFO77636; AFO77636; AMES_4100.
GeneID	12124799. 13415104.
KEGG	amm:AMES_4100. amn:RAM_21130.
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G0FQ73_AMYMD

Accession

Primary (citable) accession number: G0FQ73

Entry history

Integrated into UniProtKB/TrEMBL:	October 19, 2011
Last sequence update:	October 19, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)