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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

RAM_16560

Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:RAM_16560Imported
OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
Taxonomic identifieri713604 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaPseudonocardialesPseudonocardiaceaeAmycolatopsis
ProteomesiUP000006138 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG0FPP4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G0FPP4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAADDASLVP AWLEPMLAKA DGGRLRTGPE WAYEYKLDGY RAAMRIAPDG
60 70 80 90 100
TTVLTSRNNI DFTAEFTDLE GVLAPALDGR AAYLDGEIVV YGEDGRIDFE
110 120 130 140 150
RMQERRGRYV RHQSGPKGRE FTDVPVRFLA FDLLRLGDES LLAMPYDERR
160 170 180 190 200
RLLAELPMPD PYRVSVVRAV TFDELAADRR TPADFLAHAA SAGYEGVVAK
210 220 230 240 250
LRSSAYHPGQ RPDSWLKHPL VRTQEVIVCG WRPGQNSFTG TLGGLLLGAH
260 270 280 290 300
DPATGDLVYI GDVGTGFSQA TRADLRAQLE AMERRTHPFV TTPPREDTAR
310 320 330 340 350
ARWVEPRLVG EIVYRQFTRG GRVRHTAWRG LRHDKDPAEV LAPRAVPHEP
360 370 380 390 400
AGAAPAPPSP SSSASASASP SPEPAGQRIT VQAGDRRLTL SNLDKVLYPA
410 420 430 440 450
DGFTKGEVIN YYSRVAAVLL PHLAGRPVTF IRYPNGVDGQ KWFEKNAPKG
460 470 480 490 500
APDWLRTVRL AGTGGTIDYP LLDDLPGLVW AANMAALELH VPQWTVEQGT
510 520 530 540 550
RQPPDRLVFD LDPGPGTTIV DCCRVAERLH DVLVADGLTP YAKTSGSKGM
560 570 580 590 600
QLYCGIRTDD PAAPSAYAKR LAQRLAKETP ESVTAVMAKA QRTGRVFIDW
610 620 630 640 650
SQNNPAKTTV APYSLRGRDH PTASTPVTWD EVRACRHVNR LTFTADDVLD
660 670
RLEDHGDLLA GLIEDRAPLG
Length:670
Mass (Da):73,532
Last modified:October 19, 2011 - v1
Checksum:iD27A67A8BFE8E1AA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002896 Genomic DNA. Translation: AEK41800.1.
RefSeqiWP_013225117.1. NC_018266.1.

Genome annotation databases

EnsemblBacteriaiAEK41800; AEK41800; RAM_16560.
AFO76756; AFO76756; AMES_3220.
KEGGiamm:AMES_3220.
amn:RAM_16560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002896 Genomic DNA. Translation: AEK41800.1.
RefSeqiWP_013225117.1. NC_018266.1.

3D structure databases

ProteinModelPortaliG0FPP4.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEK41800; AEK41800; RAM_16560.
AFO76756; AFO76756; AMES_3220.
KEGGiamm:AMES_3220.
amn:RAM_16560.

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
    Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
    J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S699Imported.

Entry informationi

Entry nameiG0FPP4_AMYMS
AccessioniPrimary (citable) accession number: G0FPP4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: July 22, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.