G0FPP4 (G0FPP4_AMYMD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL AEK41800.1

Gene names

Name:	lig EMBL AFO76756.1
ORF Names:	AMES_3220 EMBL AFO76756.1, RAM_16560 EMBL AEK41800.1

Organism

Amycolatopsis mediterranei S699 EMBL AEK41800.1

Taxonomic identifier

713604 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Pseudonocardineae › Pseudonocardiaceae › Amycolatopsis › Amycolatopsis mediterranei

Protein attributes

Sequence length	670 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEK41800.1
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G0FPP4 [UniParc]. Last modified October 19, 2011. Version 1. Checksum: D27A67A8BFE8E1AA	FASTA	670	73,532
	10 20 30 40 50 60 MAADDASLVP AWLEPMLAKA DGGRLRTGPE WAYEYKLDGY RAAMRIAPDG TTVLTSRNNI 70 80 90 100 110 120 DFTAEFTDLE GVLAPALDGR AAYLDGEIVV YGEDGRIDFE RMQERRGRYV RHQSGPKGRE 130 140 150 160 170 180 FTDVPVRFLA FDLLRLGDES LLAMPYDERR RLLAELPMPD PYRVSVVRAV TFDELAADRR 190 200 210 220 230 240 TPADFLAHAA SAGYEGVVAK LRSSAYHPGQ RPDSWLKHPL VRTQEVIVCG WRPGQNSFTG 250 260 270 280 290 300 TLGGLLLGAH DPATGDLVYI GDVGTGFSQA TRADLRAQLE AMERRTHPFV TTPPREDTAR 310 320 330 340 350 360 ARWVEPRLVG EIVYRQFTRG GRVRHTAWRG LRHDKDPAEV LAPRAVPHEP AGAAPAPPSP 370 380 390 400 410 420 SSSASASASP SPEPAGQRIT VQAGDRRLTL SNLDKVLYPA DGFTKGEVIN YYSRVAAVLL 430 440 450 460 470 480 PHLAGRPVTF IRYPNGVDGQ KWFEKNAPKG APDWLRTVRL AGTGGTIDYP LLDDLPGLVW 490 500 510 520 530 540 AANMAALELH VPQWTVEQGT RQPPDRLVFD LDPGPGTTIV DCCRVAERLH DVLVADGLTP 550 560 570 580 590 600 YAKTSGSKGM QLYCGIRTDD PAAPSAYAKR LAQRLAKETP ESVTAVMAKA QRTGRVFIDW 610 620 630 640 650 660 SQNNPAKTTV APYSLRGRDH PTASTPVTWD EVRACRHVNR LTFTADDVLD RLEDHGDLLA 670 GLIEDRAPLG

References

[1]	"Whole Genome Sequence of the Rifamycin B-Producing Strain Amycolatopsis mediterranei S699." Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R. J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AEK41800.1.
[2]	"Complete Genome Sequence of Amycolatopsis mediterranei S699 Based on De Novo Assembly via a Combinatorial Sequencing Strategy." Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P. J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AFO76756.1.
[3]	Biao T. Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AFO76756.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002896 Genomic DNA. Translation: AEK41800.1. CP003729 Genomic DNA. Translation: AFO76756.1.
RefSeq	YP_005531257.1. NC_017186.1. YP_006549701.1. NC_018266.1.
3D structure databases
ProteinModelPortal	G0FPP4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEK41800; AEK41800; RAM_16560. AFO76756; AFO76756; AMES_3220.
GeneID	12120906. 13413576.
KEGG	amm:AMES_3220. amn:RAM_16560.
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G0FPP4_AMYMD

Accession

Primary (citable) accession number: G0FPP4

Entry history

Integrated into UniProtKB/TrEMBL:	October 19, 2011
Last sequence update:	October 19, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)