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G0FPP4

- G0FPP4_AMYMS

UniProt

G0FPP4 - G0FPP4_AMYMS

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ligImported
Ordered Locus Names:AMES_3220Imported, RAM_16560Imported
OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
Taxonomic identifieri713604 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
ProteomesiUP000006138: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG0FPP4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G0FPP4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAADDASLVP AWLEPMLAKA DGGRLRTGPE WAYEYKLDGY RAAMRIAPDG
60 70 80 90 100
TTVLTSRNNI DFTAEFTDLE GVLAPALDGR AAYLDGEIVV YGEDGRIDFE
110 120 130 140 150
RMQERRGRYV RHQSGPKGRE FTDVPVRFLA FDLLRLGDES LLAMPYDERR
160 170 180 190 200
RLLAELPMPD PYRVSVVRAV TFDELAADRR TPADFLAHAA SAGYEGVVAK
210 220 230 240 250
LRSSAYHPGQ RPDSWLKHPL VRTQEVIVCG WRPGQNSFTG TLGGLLLGAH
260 270 280 290 300
DPATGDLVYI GDVGTGFSQA TRADLRAQLE AMERRTHPFV TTPPREDTAR
310 320 330 340 350
ARWVEPRLVG EIVYRQFTRG GRVRHTAWRG LRHDKDPAEV LAPRAVPHEP
360 370 380 390 400
AGAAPAPPSP SSSASASASP SPEPAGQRIT VQAGDRRLTL SNLDKVLYPA
410 420 430 440 450
DGFTKGEVIN YYSRVAAVLL PHLAGRPVTF IRYPNGVDGQ KWFEKNAPKG
460 470 480 490 500
APDWLRTVRL AGTGGTIDYP LLDDLPGLVW AANMAALELH VPQWTVEQGT
510 520 530 540 550
RQPPDRLVFD LDPGPGTTIV DCCRVAERLH DVLVADGLTP YAKTSGSKGM
560 570 580 590 600
QLYCGIRTDD PAAPSAYAKR LAQRLAKETP ESVTAVMAKA QRTGRVFIDW
610 620 630 640 650
SQNNPAKTTV APYSLRGRDH PTASTPVTWD EVRACRHVNR LTFTADDVLD
660 670
RLEDHGDLLA GLIEDRAPLG
Length:670
Mass (Da):73,532
Last modified:October 19, 2011 - v1
Checksum:iD27A67A8BFE8E1AA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002896 Genomic DNA. Translation: AEK41800.1.
CP003729 Genomic DNA. Translation: AFO76756.1.
RefSeqiYP_005531257.1. NC_017186.1.
YP_006549701.1. NC_018266.1.

Genome annotation databases

EnsemblBacteriaiAEK41800; AEK41800; RAM_16560.
AFO76756; AFO76756; AMES_3220.
GeneIDi12120906.
13413576.
KEGGiamm:AMES_3220.
amn:RAM_16560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002896 Genomic DNA. Translation: AEK41800.1 .
CP003729 Genomic DNA. Translation: AFO76756.1 .
RefSeqi YP_005531257.1. NC_017186.1.
YP_006549701.1. NC_018266.1.

3D structure databases

ProteinModelPortali G0FPP4.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEK41800 ; AEK41800 ; RAM_16560 .
AFO76756 ; AFO76756 ; AMES_3220 .
GeneIDi 12120906.
13413576.
KEGGi amm:AMES_3220.
amn:RAM_16560.

Phylogenomic databases

KOi K01971.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
    Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
    J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S699Imported.
  2. "Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
    Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
    J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S699Imported.
  3. Biao T.
    Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: S699Imported.

Entry informationi

Entry nameiG0FPP4_AMYMS
AccessioniPrimary (citable) accession number: G0FPP4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: October 29, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3