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G0FNS9 (G0FNS9_AMYMS) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length510 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
G0FNS9 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: 1A349D55022D5068

FASTA51054,598
        10         20         30         40         50         60 
MLLSELVRAS AELAATRSRK AKIALLAELL RAAEIAELPT VIAYLTGQTA QDRLGAGWRT 

        70         80         90        100        110        120 
LAALGAGAAA GPVASVLEVD AALTAAAGVA AGTGSSTRRQ EVLRALFERL TKDEQQFLFR 

       130        140        150        160        170        180 
LVTGELRQGA LEGVMVDAIA AAAEVPAEDV RRAFMLSGKL GVTGVAAMTG GQAALAEFRL 

       190        200        210        220        230        240 
TLGTPIKPML ASPAESLDEA VAEHAEAIVE YKMDGARIQV HRQGDEVHVW TRTLREITGS 

       250        260        270        280        290        300 
VQELVDLVRA LPCESVVLDG ETLALTDAGR PRPFQDTMSR FGSTREEQVK ALLLRPYFFD 

       310        320        330        340        350        360 
CLHLDGVDLL DAPLSERNAA LRKVAGAHVI PGEVGTAGAA AVLEAAMEAG HEGVMVKDLA 

       370        380        390        400        410        420 
APYAAGRRGR AWLKVKPVHT IDLVVLAAEW GHGRRTGTLS NLHLGARDPD GGPPIMVGKT 

       430        440        450        460        470        480 
FKGMTDELLA WQTRTFQEIE THRDEWTVYV RPEVVVEIEL DSAQVSTRYP GGLALRFARV 

       490        500        510 
VRYRPDKDPA DADTIDTVRG LLHGDRSEGS 

« Hide

References

« Hide 'large scale' references
[1]"Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S699 EMBL AEK46754.1.
[2]"Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S699 EMBL AFO81476.1.
[3]Biao T.
Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: S699 EMBL AFO81476.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002896 Genomic DNA. Translation: AEK46754.1.
CP003729 Genomic DNA. Translation: AFO81476.1.
RefSeqYP_005536211.1. NC_017186.1.
YP_006554421.1. NC_018266.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEK46754; AEK46754; RAM_41435.
AFO81476; AFO81476; AMES_7943.
GeneID12118584.
13407471.
KEGGamm:AMES_7943.
amn:RAM_41435.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG0FNS9_AMYMS
AccessionPrimary (citable) accession number: G0FNS9
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 16, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)