Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

G0FMN1

- G0FMN1_AMYMS

UniProt

G0FMN1 - G0FMN1_AMYMS

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. DNA primase activity Source: InterPro
    2. ligase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Name:ligImported
    Ordered Locus Names:AMES_4557Imported, RAM_23480Imported
    OrganismiAmycolatopsis mediterranei (strain S699) (Nocardia mediterranei)Imported
    Taxonomic identifieri713604 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeAmycolatopsis
    ProteomesiUP000006138: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    InterProiIPR002755. DNA_primase_S.
    IPR014145. LigD_pol.
    [Graphical view]
    PfamiPF01896. DNA_primase_S. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    G0FMN1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MADKAVELEV GHRTVRISNP DRVYFPARGE TKLDLVNYYL SVGDGIVNAL    50
    RERPCMLHRF PSGVAGEKVH QKRVPNGAPP WLETVRVTFP RYNRHADELC 100
    VTELAHVAWA VQMSTVEFHP WNSRRADTEK PDEWRIDLDP MPDCGFDRVR 150
    RVAHVAHEIL DELGAVGWPK TSGGRGLHIY VRIEPRWGFT DVRRAALAFA 200
    HEVERRAPDD VTTTWWRKDR DPRLLFVDYN QNARDHTIAS AYSVRGNPEG 250
    TVSTPIRWTE IDDAEPGDFT IATVPARFAE VGDLHAGMDD AVFSLDPLLE 300
    WADRDGVEEP PEPA 314
    Length:314
    Mass (Da):35,643
    Last modified:October 19, 2011 - v1
    Checksum:i16DA3AE02B549F3A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK43176.1.
    CP003729 Genomic DNA. Translation: AFO78093.1.
    RefSeqiYP_005532633.1. NC_017186.1.
    YP_006551038.1. NC_018266.1.

    Genome annotation databases

    EnsemblBacteriaiAEK43176; AEK43176; RAM_23480.
    AFO78093; AFO78093; AMES_4557.
    GeneIDi12125269.
    13407973.
    KEGGiamm:AMES_4557.
    amn:RAM_23480.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002896 Genomic DNA. Translation: AEK43176.1 .
    CP003729 Genomic DNA. Translation: AFO78093.1 .
    RefSeqi YP_005532633.1. NC_017186.1.
    YP_006551038.1. NC_018266.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEK43176 ; AEK43176 ; RAM_23480 .
    AFO78093 ; AFO78093 ; AMES_4557 .
    GeneIDi 12125269.
    13407973.
    KEGGi amm:AMES_4557.
    amn:RAM_23480.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    InterProi IPR002755. DNA_primase_S.
    IPR014145. LigD_pol.
    [Graphical view ]
    Pfami PF01896. DNA_primase_S. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
      Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
      J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    2. "Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
      Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
      J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S699Imported.
    3. Biao T.
      Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: S699Imported.

    Entry informationi

    Entry nameiG0FMN1_AMYMS
    AccessioniPrimary (citable) accession number: G0FMN1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3