G0FKM5 (G0FKM5_AMYMD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glutamate decarboxylase EMBL AEK47566.1

Gene names

Name:	gadB EMBL AFO82266.1
ORF Names:	AMES_8734 EMBL AFO82266.1, RAM_45505 EMBL AEK47566.1

Organism

Amycolatopsis mediterranei S699 EMBL AEK47566.1

Taxonomic identifier

713604 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Pseudonocardineae › Pseudonocardiaceae › Amycolatopsis › Amycolatopsis mediterranei

Protein attributes

Sequence length	462 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Gene Ontology (GO)
Biological_process	glutamate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glutamate decarboxylase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G0FKM5 [UniParc]. Last modified October 19, 2011. Version 1. Checksum: D2D44AF965447041	FASTA	462	51,110
	10 20 30 40 50 60 MVLHQGKAGR PDRTAGTNPL YAGANPALAA GFVMPHDKLR EDSLPPDTAL QLVRDELMLD 70 80 90 100 110 120 GNARLNLATF VTTWMEPQAR ELMAECVDKN MIDKDEYPQT AELERRCVNI LADLWHAPDP 130 140 150 160 170 180 GDVMGCSTTG SSEACMLAGM ALKRRWSKLG RTGKPNLVMG ANVQVCWEKF CEYWEVEPRL 190 200 210 220 230 240 VPMDGDRYHL TADEAVARCD ENTIGVVAIL GSTFDGSYEP VAEIAAALDS LEERTGWDIP 250 260 270 280 290 300 VHVDGASGAM IAPFLDPHLE WDFRLPRVAS INTSGHKYGL VYPGVGWVLW RDKAALPSEL 310 320 330 340 350 360 VFNVNYLGGD MPTFALNFSR PGAEVAAQYY TFVRLGREGF RAVQQASRDV ALHLSSGIAS 370 380 390 400 410 420 LGPFSLLTRG DQLPVFAFTT RPDVGFDVFD VSRRLRERGW LVPAYTFPEN RTDLAVLRIV 430 440 450 460 VRNGFTHDLA DLLLADLRRV LPELEQFGGR PKDPAKATAF HH

References

[1]	"Whole Genome Sequence of the Rifamycin B-Producing Strain Amycolatopsis mediterranei S699." Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R. J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AEK47566.1.
[2]	"Complete Genome Sequence of Amycolatopsis mediterranei S699 Based on De Novo Assembly via a Combinatorial Sequencing Strategy." Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P. J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AFO82266.1.
[3]	Biao T. Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: S699 EMBL AFO82266.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002896 Genomic DNA. Translation: AEK47566.1. CP003729 Genomic DNA. Translation: AFO82266.1.
RefSeq	YP_005537023.1. NC_017186.1. YP_006555211.1. NC_018266.1.
3D structure databases
ProteinModelPortal	G0FKM5.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEK47566; AEK47566; RAM_45505. AFO82266; AFO82266; AMES_8734.
GeneID	12125810. 13409557.
KEGG	amm:AMES_8734. amn:RAM_45505.
Phylogenomic databases
KO	K01580.
Family and domain databases
Gene3D	3.40.640.10. 1 hit.
InterPro	IPR010107. Glutamate_decarboxylase. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
PANTHER	PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

G0FKM5_AMYMD

Accession

Primary (citable) accession number: G0FKM5

Entry history

Integrated into UniProtKB/TrEMBL:	October 19, 2011
Last sequence update:	October 19, 2011
Last modified:	April 3, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)