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G0FKM5 (G0FKM5_AMYMS) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length462 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
G0FKM5 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: D2D44AF965447041

FASTA46251,110
        10         20         30         40         50         60 
MVLHQGKAGR PDRTAGTNPL YAGANPALAA GFVMPHDKLR EDSLPPDTAL QLVRDELMLD 

        70         80         90        100        110        120 
GNARLNLATF VTTWMEPQAR ELMAECVDKN MIDKDEYPQT AELERRCVNI LADLWHAPDP 

       130        140        150        160        170        180 
GDVMGCSTTG SSEACMLAGM ALKRRWSKLG RTGKPNLVMG ANVQVCWEKF CEYWEVEPRL 

       190        200        210        220        230        240 
VPMDGDRYHL TADEAVARCD ENTIGVVAIL GSTFDGSYEP VAEIAAALDS LEERTGWDIP 

       250        260        270        280        290        300 
VHVDGASGAM IAPFLDPHLE WDFRLPRVAS INTSGHKYGL VYPGVGWVLW RDKAALPSEL 

       310        320        330        340        350        360 
VFNVNYLGGD MPTFALNFSR PGAEVAAQYY TFVRLGREGF RAVQQASRDV ALHLSSGIAS 

       370        380        390        400        410        420 
LGPFSLLTRG DQLPVFAFTT RPDVGFDVFD VSRRLRERGW LVPAYTFPEN RTDLAVLRIV 

       430        440        450        460 
VRNGFTHDLA DLLLADLRRV LPELEQFGGR PKDPAKATAF HH 

« Hide

References

« Hide 'large scale' references
[1]"Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699."
Verma M., Kaur J., Kumar M., Kumari K., Saxena A., Anand S., Nigam A., Ravi V., Raghuvanshi S., Khurana P., Tyagi A.K., Khurana J.P., Lal R.
J. Bacteriol. 193:5562-5563(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S699 EMBL AEK47566.1.
[2]"Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy."
Tang B., Zhao W., Zheng H., Zhuo Y., Zhang L., Zhao G.P.
J. Bacteriol. 194:5699-5700(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: S699 EMBL AFO82266.1.
[3]Biao T.
Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: S699 EMBL AFO82266.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002896 Genomic DNA. Translation: AEK47566.1.
CP003729 Genomic DNA. Translation: AFO82266.1.
RefSeqYP_005537023.1. NC_017186.1.
YP_006555211.1. NC_018266.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEK47566; AEK47566; RAM_45505.
AFO82266; AFO82266; AMES_8734.
GeneID12125810.
13409557.
KEGGamm:AMES_8734.
amn:RAM_45505.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01580.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameG0FKM5_AMYMS
AccessionPrimary (citable) accession number: G0FKM5
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 16, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)