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G0DQ15 (G0DQ15_9GAMM) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Diaminobutyrate decarboxylase EMBL AEH13437.1
EC=4.1.1.86 EMBL AEH13437.1
Gene names
ORF Names:Sbal117_1683 EMBL AEH13437.1
OrganismShewanella baltica OS117 EMBL AEH13437.1
Taxonomic identifier693970 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella ›

Protein attributes

Sequence length549 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Sequences

Sequence LengthMass (Da)Tools
G0DQ15 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: F938B42EB2905B22

FASTA54960,728
        10         20         30         40         50         60 
MTQKLPRQAT ASEESLLRIF TAPEDAGSTL SIIEQKLSED LAGFLGDSIA ALEKPLSEIE 

        70         80         90        100        110        120 
TDFQAFEIPT QPRFVSDYTD EIMQNLVAHS VHTAAPSFIG HMTSALPYFV LPLSKMMVGL 

       130        140        150        160        170        180 
NQNLVKIETS KAFTPLERQV LGMMHHLIYD QDTDFYQSWM HSANHSLGAF CSGGTVANIT 

       190        200        210        220        230        240 
ALWIARNQLL KADGEFKGVS REGLLKALRH YGYDDLAILV SERGHYSLGK AVDLLGIGRD 

       250        260        270        280        290        300 
NIISIPTGSD NKVDVAKMRQ AALELARKNI KVLAIVGVAG TTETGNVDPL TELAALAKEL 

       310        320        330        340        350        360 
NCHFHVDAAW GGASLLSNKY RHLLAGIELA DSVTIDAHKQ MYVPMGAGMV LFKDPEFAHA 

       370        380        390        400        410        420 
IAHHAEYILR RGSKDLGSQT LEGSRPGMAM LVHACLQIIG RDGYEILINN SLEKARYFAE 

       430        440        450        460        470        480 
QIKAHEDFEL VTEPELCLLT YRYVPARVQA AMKLACEQAD TIRVARFNEL LDGLTQFIQK 

       490        500        510        520        530        540 
HQREQGKSFV SRTRIQPARY FRQATVVFRV VLANPLTSHD ILNQVLIEQS EIAALDNEFL 


PALMAMVAQ

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References

[1]"Complete sequence of chromosome of Shewanella baltica OS117."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Lu M., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Hofle M., Brettar I. expand/collapse author list , Konstantinidis K., Deng J., Tiedje J., Auchtung J., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: OS117 EMBL AEH13437.1.
[2]"Genome Sequencing of Five Shewanella baltica Strains Recovered from the Oxic-Anoxic Interface of the Baltic Sea."
Caro-Quintero A., Auchtung J., Deng J., Brettar I., Hofle M., Tiedje J.M., Konstantinidis K.T.
J. Bacteriol. 194:1236-1236(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: OS117 EMBL AEH13437.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002811 Genomic DNA. Translation: AEH13437.1.
RefSeqYP_006036931.1. NC_017579.1.

3D structure databases

ProteinModelPortalG0DQ15.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEH13437; AEH13437; Sbal117_1683.
GeneID12633425.
KEGGsbs:Sbal117_1683.

Phylogenomic databases

KOK01580.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameG0DQ15_9GAMM
AccessionPrimary (citable) accession number: G0DQ15
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info