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G0DMP3 (G0DMP3_9GAMM) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=1.1.1.42 EMBL AEH14317.1
Gene names
ORF Names:Sbal117_2611 EMBL AEH14317.1
OrganismShewanella baltica OS117 [Complete proteome] EMBL AEH14317.1
Taxonomic identifier693970 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length741 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region134 – 1418Substrate binding By similarity

Sites

Metal binding3521Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5501Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5541Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1471Substrate By similarity
Binding site5491Substrate By similarity PIRSR PIRSR009407-2
Site2571Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4221Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
G0DMP3 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: BA28276443C5D718

FASTA74180,354
        10         20         30         40         50         60 
MKDNSSTIIY TETDEAPALA TLSLLPIIRT FTDAAGVAVE TRDISLSGRI IASFPEQLTE 

        70         80         90        100        110        120 
AQKIGDHLTE LGELANQPEA NIIKLPNISA SIPQLKACIL ELQQKGYDIP HYPDEPKTDA 

       130        140        150        160        170        180 
EKSIKTRYDK IKGSAVNPVL REGNSDRRAP LSVKNFAKKN PHSMGKWATD SKSHVAHMTY 

       190        200        210        220        230        240 
GDFYGSEQSV TLSDAGSVNI VLTQKDGQEV VLKSGLKLLA GEIIDAAVLS KKALVSFYER 

       250        260        270        280        290        300 
EIENAKAEDV LLSLHLKATM MKVSDPIMFG HAVKVFFKPV FDKHAALFAE LGVDVNNGFG 

       310        320        330        340        350        360 
DVYAKIATLP ADSRAEVEAD IAAVYAARPA LAMVDSDKGI TNLHVPSDII IDASMPAAIR 

       370        380        390        400        410        420 
SSGQMWGPDG QLHDTKAMIP DRCYAGIYQE TIAFCKEHGA FDPKTMGSVP NVGLMAQKAE 

       430        440        450        460        470        480 
EYGSHDKTFE MPADGVVNVV DASGKVLMSH NVEAGDIWRM CQVKDAPIRD WVKLAVRRAR 

       490        500        510        520        530        540 
LSNTPAVFWL DSKRAHDAQI IAKVQQYLPE HDTDGLDISI MSPEDATRLS LARIKEGKDT 

       550        560        570        580        590        600 
ISVTGNVLRD YLTDLFPILE LGTSAKMLSI VPLMNGGGLF ETGAGGSAPK HVQQVEKEGH 

       610        620        630        640        650        660 
LRWDSLGEFL ALAASLEHLS QTVGNPKAQV LADTLDQAIG QFLDSNKSPS RRVGELDNRG 

       670        680        690        700        710        720 
SHFYLAMYWA QALAAQTGDE QLQAHFIPLA HALAANEQVI VAELATAQGA PVDLGGYYRL 

       730        740 
DAAKAEKAMR PSETLNKLLI A 

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References

[1]"Complete sequence of chromosome of Shewanella baltica OS117."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Lu M., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Hofle M., Brettar I. expand/collapse author list , Konstantinidis K., Deng J., Tiedje J., Auchtung J., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: OS117 EMBL AEH14317.1.
[2]"Genome Sequencing of Five Shewanella baltica Strains Recovered from the Oxic-Anoxic Interface of the Baltic Sea."
Caro-Quintero A., Auchtung J., Deng J., Brettar I., Hofle M., Tiedje J.M., Konstantinidis K.T.
J. Bacteriol. 194:1236-1236(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: OS117 EMBL AEH14317.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002811 Genomic DNA. Translation: AEH14317.1.
RefSeqYP_006037811.1. NC_017579.1.

3D structure databases

ProteinModelPortalG0DMP3.
SMRG0DMP3. Positions 8-739.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEH14317; AEH14317; Sbal117_2611.
GeneID12634380.
KEGGsbs:Sbal117_2611.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00031.

Enzyme and pathway databases

BioCycSBAL693970:GLK3-2662-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameG0DMP3_9GAMM
AccessionPrimary (citable) accession number: G0DMP3
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: July 9, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)