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G0DMP3

- G0DMP3_9GAMM

UniProt

G0DMP3 - G0DMP3_9GAMM

Protein
Submitted name:

Isocitrate dehydrogenase, NADP-dependent

Gene

Sbal117_2611

Organism
Shewanella baltica OS117
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (19 Oct 2011)
      Previous versions | rss
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    Functioni

    Cofactori

    Binds 1 magnesium or manganese ion per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei147 – 1471SubstrateUniRule annotation
    Sitei257 – 2571Critical for catalysisUniRule annotation
    Metal bindingi352 – 3521Magnesium or manganese
    Sitei422 – 4221Critical for catalysisUniRule annotation
    Binding sitei549 – 5491SubstrateUniRule annotation
    Metal bindingi550 – 5501Magnesium or manganese
    Metal bindingi554 – 5541Magnesium or manganese

    GO - Molecular functioni

    1. isocitrate dehydrogenase (NADP+) activity Source: UniProtKB-EC
    2. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. tricarboxylic acid cycle Source: InterPro

    Keywords - Molecular functioni

    OxidoreductaseImported

    Keywords - Ligandi

    MagnesiumUniRule annotation, Metal-bindingUniRule annotation

    Enzyme and pathway databases

    BioCyciSBAL693970:GLK3-2662-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Isocitrate dehydrogenase, NADP-dependentImported (EC:1.1.1.42Imported)
    Gene namesi
    ORF Names:Sbal117_2611Imported
    OrganismiShewanella baltica OS117Imported
    Taxonomic identifieri693970 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000008879: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliG0DMP3.
    SMRiG0DMP3. Positions 8-739.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni134 – 1418Substrate bindingUniRule annotation

    Phylogenomic databases

    KOiK00031.

    Family and domain databases

    Gene3Di3.40.718.10. 3 hits.
    InterProiIPR004436. Isocitrate_DH_NADP_mono.
    IPR024084. IsoPropMal-DH-like_dom.
    [Graphical view]
    PfamiPF03971. IDH. 1 hit.
    [Graphical view]
    PIRSFiPIRSF009407. IDH_monmr. 1 hit.
    TIGRFAMsiTIGR00178. monomer_idh. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    G0DMP3-1 [UniParc]FASTAAdd to Basket

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    MKDNSSTIIY TETDEAPALA TLSLLPIIRT FTDAAGVAVE TRDISLSGRI    50
    IASFPEQLTE AQKIGDHLTE LGELANQPEA NIIKLPNISA SIPQLKACIL 100
    ELQQKGYDIP HYPDEPKTDA EKSIKTRYDK IKGSAVNPVL REGNSDRRAP 150
    LSVKNFAKKN PHSMGKWATD SKSHVAHMTY GDFYGSEQSV TLSDAGSVNI 200
    VLTQKDGQEV VLKSGLKLLA GEIIDAAVLS KKALVSFYER EIENAKAEDV 250
    LLSLHLKATM MKVSDPIMFG HAVKVFFKPV FDKHAALFAE LGVDVNNGFG 300
    DVYAKIATLP ADSRAEVEAD IAAVYAARPA LAMVDSDKGI TNLHVPSDII 350
    IDASMPAAIR SSGQMWGPDG QLHDTKAMIP DRCYAGIYQE TIAFCKEHGA 400
    FDPKTMGSVP NVGLMAQKAE EYGSHDKTFE MPADGVVNVV DASGKVLMSH 450
    NVEAGDIWRM CQVKDAPIRD WVKLAVRRAR LSNTPAVFWL DSKRAHDAQI 500
    IAKVQQYLPE HDTDGLDISI MSPEDATRLS LARIKEGKDT ISVTGNVLRD 550
    YLTDLFPILE LGTSAKMLSI VPLMNGGGLF ETGAGGSAPK HVQQVEKEGH 600
    LRWDSLGEFL ALAASLEHLS QTVGNPKAQV LADTLDQAIG QFLDSNKSPS 650
    RRVGELDNRG SHFYLAMYWA QALAAQTGDE QLQAHFIPLA HALAANEQVI 700
    VAELATAQGA PVDLGGYYRL DAAKAEKAMR PSETLNKLLI A 741
    Length:741
    Mass (Da):80,354
    Last modified:October 19, 2011 - v1
    Checksum:iBA28276443C5D718
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002811 Genomic DNA. Translation: AEH14317.1.
    RefSeqiWP_011847002.1. NC_017579.1.
    YP_006037811.1. NC_017579.1.

    Genome annotation databases

    EnsemblBacteriaiAEH14317; AEH14317; Sbal117_2611.
    GeneIDi12634380.
    KEGGisbs:Sbal117_2611.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002811 Genomic DNA. Translation: AEH14317.1 .
    RefSeqi WP_011847002.1. NC_017579.1.
    YP_006037811.1. NC_017579.1.

    3D structure databases

    ProteinModelPortali G0DMP3.
    SMRi G0DMP3. Positions 8-739.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEH14317 ; AEH14317 ; Sbal117_2611 .
    GeneIDi 12634380.
    KEGGi sbs:Sbal117_2611.

    Phylogenomic databases

    KOi K00031.

    Enzyme and pathway databases

    BioCyci SBAL693970:GLK3-2662-MONOMER.

    Family and domain databases

    Gene3Di 3.40.718.10. 3 hits.
    InterProi IPR004436. Isocitrate_DH_NADP_mono.
    IPR024084. IsoPropMal-DH-like_dom.
    [Graphical view ]
    Pfami PF03971. IDH. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF009407. IDH_monmr. 1 hit.
    TIGRFAMsi TIGR00178. monomer_idh. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequencing of Five Shewanella baltica Strains Recovered from the Oxic-Anoxic Interface of the Baltic Sea."
      Caro-Quintero A., Auchtung J., Deng J., Brettar I., Hofle M., Tiedje J.M., Konstantinidis K.T.
      J. Bacteriol. 194:1236-1236(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: OS117Imported.

    Entry informationi

    Entry nameiG0DMP3_9GAMM
    AccessioniPrimary (citable) accession number: G0DMP3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 19, 2011
    Last sequence update: October 19, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3