G0CM00 (G0CM00_XANCA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Superoxide dismutase [Cu-Zn] RuleBase RU000393
EC=1.15.1.1 RuleBase RU000393

Gene names

Name:	sodC EMBL AEL09193.1
ORF Names:	XCR_4337 EMBL AEL09193.1

Organism

Xanthomonas campestris pv. raphani 756C EMBL AEL09193.1

Taxonomic identifier

990315 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xanthomonas › Xanthomonas campestris › Xanthomonas campestris pv. raphani

Protein attributes

Sequence length	200 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity. RuleBase RU000393
Catalytic activity	2 superoxide + 2 H+ = O2 + H2O2. RuleBase RU000393
Cofactor	Binds 1 copper ion per subunit By similarity. RuleBase RU000393 Binds 1 zinc ion per subunit By similarity. RuleBase RU000393
Sequence similarities	Belongs to the Cu-Zn superoxide dismutase family. RuleBase RU000393

Ontologies

Keywords
Ligand	Copper RuleBase RU000393 Metal-binding RuleBase RU000393 Zinc RuleBase RU000393
Molecular function	Oxidoreductase RuleBase RU000393
Gene Ontology (GO)
Biological_process	superoxide metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW superoxide dismutase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G0CM00 [UniParc]. Last modified October 19, 2011. Version 1. Checksum: 8C10A2F1B5E1B3A1	FASTA	200	20,129
	10 20 30 40 50 60 MRYRSSTVVA LTALALAACS STPPAPPPPP PVPARVVPVR AVQQAEAPLA SASGSLVSGR 70 80 90 100 110 120 VVLVPALRGI RLTGTVGGLR PGAVAGFHVH ERGDCSAADA SSAGGHFNPT GAAHGRAGNG 130 140 150 160 170 180 THHLGDMDNL RADAEGVAHL DMILSDITLG DAAPSDVLGK ALIVHADADD YRSQPSGNAG 190 200 ARLACGVIRA TKWQTPPSQP

References

[1]

"Two New Complete Genome Sequences Offer Insight into Host and Tissue Specificity of Plant Pathogenic Xanthomonas spp." Bogdanove A.J., Koebnik R., Lu H., Furutani A., Angiuoli S.V., Patil P.B., Van Sluys M.A., Ryan R.P., Meyer D.F., Han S.W., Aparna G., Rajaram M., Delcher A.L., Phillippy A.M., Puiu D., Schatz M.C., Shumway M., Sommer D.D. , Trapnell C., Benahmed F., Dimitrov G., Madupu R., Radune D., Sullivan S., Jha G., Ishihara H., Lee S.W., Pandey A., Sharma V., Sriariyanun M., Szurek B., Vera-Cruz C.M., Dorman K.S., Ronald P.C., Verdier V., Dow J.M., Sonti R.V., Tsuge S., Brendel V.P., Rabinowicz P.D., Leach J.E., White F.F., Salzberg S.L. J. Bacteriol. 193:5450-5464(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: 756C EMBL AEL09193.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002789 Genomic DNA. Translation: AEL09193.1.
RefSeq	YP_005639311.1. NC_017271.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEL09193; AEL09193; XCR_4337.
GeneID	12265741.
KEGG	xcp:XCR_4337.
Phylogenomic databases
KO	K04565.
Enzyme and pathway databases
BioCyc	XCAM990315:GLMR-4331-MONOMER.
Family and domain databases
Gene3D	2.60.40.200. 1 hit.
InterPro	IPR024134. SOD_Cu/Zn_/chaperones. IPR018152. SOD_Cu/Zn_BS. IPR001424. SOD_Cu_Zn_dom. [Graphical view]
PANTHER	PTHR10003. PTHR10003. 1 hit.
Pfam	PF00080. Sod_Cu. 1 hit. [Graphical view]
PRINTS	PR00068. CUZNDISMTASE.
SUPFAM	SSF49329. SOD_Cu_Zn. 1 hit.
PROSITE	PS00087. SOD_CU_ZN_1. 1 hit. PS00332. SOD_CU_ZN_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G0CM00_XANCA

Accession

Primary (citable) accession number: G0CM00

Entry history

Integrated into UniProtKB/TrEMBL:	October 19, 2011
Last sequence update:	October 19, 2011
Last modified:	May 29, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)