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G0BE46 (G0BE46_SERSA) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length439 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. RuleBase RU000609 HAMAP-Rule MF_00455 SAAS SAAS001998

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 SAAS SAAS001998.

Sequence similarities

Belongs to the xylose isomerase family. RuleBase RU000609 HAMAP-Rule MF_00455

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1011 By similarity HAMAP-Rule MF_00455
Active site1041 By similarity HAMAP-Rule MF_00455
Metal binding2321Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2681Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2681Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2711Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2961Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3071Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3091Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3391Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
G0BE46 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: 3C11EEB837F3E444

FASTA43949,465
        10         20         30         40         50         60 
MQSYFDQLEQ VRYEGPDSNN PLAFRHYNPD EWVLGKRMAD HLRFAACYWH TFCWNGADMF 

        70         80         90        100        110        120 
GVGAFDRPWQ QPGDALALAK RKADVAFEFF HKLNVPYYCF HDVDVSPEGA SLKEYLNNFA 

       130        140        150        160        170        180 
VMTDVLAEKQ QSSGVKLLWG TANCFTHPRY GAGAATNPDP EVFSWAATQV FTAMNATHQL 

       190        200        210        220        230        240 
GGENYVLWGG REGYETLLNT DLRQEREQIG RFMQMVVEHK HKTGFQGTLL IEPKPQEPTK 

       250        260        270        280        290        300 
HQYDYDVATV YGFLKQFGLE KEIKVNIEAN HATLAGHSFH HEIATAIALG IFGSVDANRG 

       310        320        330        340        350        360 
DPQLGWDTDQ FPNSVEENAL VMFEILKAGG FTTGGLNFDA KVRRQSTDKY DLFYGHIGAM 

       370        380        390        400        410        420 
DTMALALKVA AKMTADDRLP QQVARRYAGW NGELGQQILQ GKLSLEALAQ YAEQHALAPQ 

       430 
HASGRQEQLE NLMNRYLFG 

« Hide

References

[1]"Complete sequence of Serratia sp. AS9."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Lu M., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Neupane S., Alstrom S. expand/collapse author list , Finlay R., Hogberg N., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]"Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9."
Neupane S., Hogberg N., Alstrom S., Lucas S., Han J., Lapidus A., Cheng J.F., Bruce D., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Lu M., Han C., Detter J.C., Tapia R., Fiebig A., Land M. expand/collapse author list , Hauser L., Kyrpides N.C., Ivanova N., Pagani I., Klenk H.P., Woyke T., Finlay R.D.
Stand. Genomic Sci. 6:54-62(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: AS9 EMBL AEF43223.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002773 Genomic DNA. Translation: AEF43223.1.
RefSeqYP_004503484.1. NC_015567.1.

3D structure databases

ProteinModelPortalG0BE46.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF43223; AEF43223; SerAS9_0058.
GeneID10619120.
KEGGsrr:SerAS9_0058.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01805.
OMALFHAHIG.

Enzyme and pathway databases

BioCycSPLY768492:GLK1-58-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG0BE46_SERSA
AccessionPrimary (citable) accession number: G0BE46
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: July 9, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)