Skip Header

Contribute Send feedback
Read comments (?) or add your own

G0B7F5 (G0B7F5_SERSA) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Isocitrate dehydrogenase [NADP] RuleBase RU004446
EC=1.1.1.42 RuleBase RU004446
Gene names
Ordered Locus Names:SerAS9_1976 EMBL AEF45103.1
OrganismSerratia plymuthica (strain AS9) [Complete proteome] [HAMAP] EMBL AEF45103.1
Taxonomic identifier768492 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Serratia ›

Protein attributes

Sequence length417 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH. RuleBase RU004446

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. RuleBase RU004446

Sequence similarities

Belongs to the isocitrate and isopropylmalate dehydrogenases family. RuleBase RU004443

Sequences

Sequence LengthMass (Da)Tools
G0B7F5 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: C1C20D55FBC7A587

FASTA41745,719
        10         20         30         40         50         60 
MESKVVVPAE GKQITVDAQG KLVVPNNPII PFIEGDGIGV DVTPAMIHVV DAAVKKAYHG 

        70         80         90        100        110        120 
ERKISWMEIY TGEKSTHVYG KDVWLPEETL DLIRDYRVAI KGPLTTPVGG GIRSLNVALR 

       130        140        150        160        170        180 
QQLDLYVCLR PVRYYQGTPS PVKQPELTDM VIFRENAEDI YAGIEWKAGS AEADKVIKFL 

       190        200        210        220        230        240 
RDEMGVKKIR FPEQCGIGVK PCSEEGTKRL VRAAIEYAIT NDRDSVTLVH KGNIMKFTEG 

       250        260        270        280        290        300 
AFKDWGYELA REEFGGELID GGPWLKIKNP NTGKEIVVKD VIADAFLQQI LLRPAEYDVI 

       310        320        330        340        350        360 
ACMNLNGDYI SDALAAQVGG IGIAPGANIG SDCALFEATH GTAPKYAGQD KVNPGSIILS 

       370        380        390        400        410 
AEMMLRHMGW FEAADLIVKG MEGAIAAKTV TYDFERLMEG AKLLKCSEFG DAIVKHM

« Hide

References

[1]"Complete sequence of Serratia sp. AS9."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Lu M., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Neupane S., Alstrom S. expand/collapse author list , Finlay R., Hogberg N., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]"Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9."
Neupane S., Hogberg N., Alstrom S., Lucas S., Han J., Lapidus A., Cheng J.F., Bruce D., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Lu M., Han C., Detter J.C., Tapia R., Fiebig A., Land M. expand/collapse author list , Hauser L., Kyrpides N.C., Ivanova N., Pagani I., Klenk H.P., Woyke T., Finlay R.D.
Stand. Genomic Sci. 6:54-62(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: AS9.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002773 Genomic DNA. Translation: AEF45103.1.
RefSeqYP_004505364.1. NC_015567.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF45103; AEF45103; SerAS9_1976.
GeneID10621099.
KEGGsrr:SerAS9_1976.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00031.
OMAFRDWGYE.

Family and domain databases

Gene3D3.40.718.10. 1 hit.
InterProIPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR004439. Isocitrate_DH_NADP_dimer_prok.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERPTHR11835. PTHR11835. 1 hit.
PfamPF00180. Iso_dh. 1 hit.
[Graphical view]
TIGRFAMsTIGR00183. prok_nadp_idh. 1 hit.
PROSITEPS00470. IDH_IMDH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG0B7F5_SERSA
AccessionPrimary (citable) accession number: G0B7F5
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 3, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info