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G0AIV1 (G0AIV1_COLFT) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Phosphoribosylamine--glycine ligase HAMAP-Rule MF_00138
EC=6.3.4.13 HAMAP-Rule MF_00138
Alternative name(s):
GARS HAMAP-Rule MF_00138
Glycinamide ribonucleotide synthetase HAMAP-Rule MF_00138
Phosphoribosylglycinamide synthetase HAMAP-Rule MF_00138
Gene names
Name:purD HAMAP-Rule MF_00138 EMBL AEK60884.1
Ordered Locus Names:CFU_1052 EMBL AEK60884.1
OrganismCollimonas fungivorans (strain Ter331) [Complete proteome] [HAMAP] EMBL AEK60884.1
Taxonomic identifier1005048 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Oxalobacteraceae › Collimonas ›

Protein attributes

Sequence length424 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + 5-phospho-D-ribosylamine + glycine = ADP + phosphate + N(1)-(5-phospho-D-ribosyl)glycinamide. HAMAP-Rule MF_00138

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. HAMAP-Rule MF_00138

Pathway

Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/2. HAMAP-Rule MF_00138

Sequence similarities

Belongs to the GARS family. HAMAP-Rule MF_00138

Contains 1 ATP-grasp domain. HAMAP-Rule MF_00138

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain107 – 314208ATP-grasp By similarity HAMAP-Rule MF_00138
Nucleotide binding133 – 19462ATP By similarity HAMAP-Rule MF_00138

Sites

Metal binding2841Magnesium or manganese By similarity HAMAP-Rule MF_00138
Metal binding2861Magnesium or manganese By similarity HAMAP-Rule MF_00138

Sequences

Sequence LengthMass (Da)Tools
G0AIV1 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: 2BCF39887EFC18D9

FASTA42445,522
        10         20         30         40         50         60 
MKILVVGSGG REHALAWKIA QSPRIQTVFV APGNGGTALD QRLENINITD PAALADFVER 

        70         80         90        100        110        120 
EHVALTVVGP ETPLAAGIVN IFRNRGLKIF GPTREAAQLE SSKDFAKSFM QRHHIPTAEY 

       130        140        150        160        170        180 
QTFSDVGAAH QYIDQKGAPI VIKADGLAAG KGVVVAMTVE EAHGAVDMML SDNRLGDAGA 

       190        200        210        220        230        240 
RVVIEEFLAG EEASFIVMVD GKNILPLATS QDHKRLKDDD QGPNTGGMGA YSPAPIVTPA 

       250        260        270        280        290        300 
LHARVMREII TPTVQGMAKD GIPFSGFLYA GLMIDDKGNP KTLEFNCRMG DPETQPIMAR 

       310        320        330        340        350        360 
LKTDLLTVME HAVNGTLDTI ELEWDRRTAL GVVMAAAGYP DAPRKDDLIT GIPAETVDTV 

       370        380        390        400        410        420 
TFHAGTTLNG ERLTTAGGRV LCVVGLGDSV KMAQKQAYNV IDAIHFDGAQ FRRDIGWRAL 


KKHA

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References

[1]"Complete sequence of Collimonas fungivorans Ter331."
Leveau J.H.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Ter331.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002745 Genomic DNA. Translation: AEK60884.1.
RefSeqYP_004751707.1. NC_015856.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEK60884; AEK60884; CFU_1052.
GeneID10991767.
KEGGcfu:CFU_1052.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01945.

Enzyme and pathway databases

BioCycCFUN1005048:GJNH-1058-MONOMER.
UniPathwayUPA00074; UER00125.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
3.40.50.20. 1 hit.
3.90.600.10. 1 hit.
HAMAPMF_00138. GARS.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR016185. PreATP-grasp_dom.
IPR020561. PRibGlycinamid_synth_ATP-grasp.
IPR000115. PRibGlycinamide_synth.
IPR020560. PRibGlycinamide_synth_C-dom.
IPR020562. PRibGlycinamide_synth_N.
IPR011054. Rudment_hybrid_motif.
[Graphical view]
PfamPF01071. GARS_A. 1 hit.
PF02843. GARS_C. 1 hit.
PF02844. GARS_N. 1 hit.
[Graphical view]
SUPFAMSSF52440. PreATP-grasp-like. 1 hit.
SSF51246. Rudmnt_hyb_motif. 1 hit.
TIGRFAMsTIGR00877. purD. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG0AIV1_COLFT
AccessionPrimary (citable) accession number: G0AIV1
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: May 29, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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