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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

CFU_1974

Organism
Collimonas fungivorans (strain Ter331)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCFUN1005048:GJNH-1987-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:CFU_1974Imported
OrganismiCollimonas fungivorans (strain Ter331)Imported
Taxonomic identifieri1005048 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeCollimonas
ProteomesiUP000008392: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG0A8U2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G0A8U2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDPLTSYRK KRDFTVTPEP STAGQASRGG RAFVIQKHWA SRLHYDFRIE
60 70 80 90 100
LGGAMKSWAI PKGPSLDPKD KRMAVHVEDH PISYNSFEGD IPAGQYGAGK
110 120 130 140 150
VIIWDKGSWE AVDGDPLKQY RSGHLKFELR GHKLHGRWAL IRMKPDSQKK
160 170 180 190 200
EAWLLIKEKD DYARPALTYS VVDEMPDSVA GLAVKEERKP APVAASPRKH
210 220 230 240 250
AKMPAGAVKA ALPTHLAPQL ATLADAAPGG AGWLYEIKFD GYRLLARVSG
260 270 280 290 300
KSLRLYTRNG NDWTAKLPAL TAALQRMKLP AGWYDGEIVV LDERGLPDFQ
310 320 330 340 350
RLQQAFDSAG SAAAVSYYLF DLPFYDGYDM RGVPLRERRK LLQSLFNTKT
360 370 380 390 400
PAPVRLSDAF DVSAKDIVAS ACRMGLEGVI GKRQDSLYVT RRSTDWIKLK
410 420 430 440 450
CTQRQEFVIG GYTDPQGSRI GIGSLLLGVH DAHGKLRYAG NVGTGFDARG
460 470 480 490 500
LAALANKLKA ISAASSPFSG ATGRYRKVHW VEPLLLAEVS FAEWTADGHI
510 520 530 540 550
RHSVFHGLRS DKQPQAINRE NAMHIPAAEP QSKTLESLKV THGERVIDAA
560 570 580 590 600
SGITKIELIR YYGLVAPLML PHLKGRPVSL LRAPDGLAGQ LFFQKHLGEI
610 620 630 640 650
KMHGVRQLAT ALDPGHPPLL EIAGAGGLLS AAQMNVLEFH TWNALKTSIM
660 670 680 690 700
KPDRMTFDLD PGEKTTWESV QQAALLLRAF LQQLELEAVI KTSGGKGLHV
710 720 730 740 750
VVPIKKQHGW DTVKDFSHAI VDHLAGALPD RFVARSGARN RVGKIFVDYL
760 770 780 790 800
RNGFGATTAA AWSVRARPGL GVSVPIGWDE LEKIKGGAHW TVADIHARLD
810 820 830
QGNAPWEANG SRPQSLARPM KILEFKPARK
Length:830
Mass (Da):91,259
Last modified:October 19, 2011 - v1
Checksum:i0C989565AF6F69B1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002745 Genomic DNA. Translation: AEK61805.1.
RefSeqiWP_014005959.1. NC_015856.1.
YP_004752628.1. NC_015856.1.

Genome annotation databases

EnsemblBacteriaiAEK61805; AEK61805; CFU_1974.
GeneIDi10992688.
KEGGicfu:CFU_1974.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002745 Genomic DNA. Translation: AEK61805.1.
RefSeqiWP_014005959.1. NC_015856.1.
YP_004752628.1. NC_015856.1.

3D structure databases

ProteinModelPortaliG0A8U2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEK61805; AEK61805; CFU_1974.
GeneIDi10992688.
KEGGicfu:CFU_1974.

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.

Enzyme and pathway databases

BioCyciCFUN1005048:GJNH-1987-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Collimonas fungivorans Ter331."
    Leveau J.H.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Ter331Imported.

Entry informationi

Entry nameiG0A8U2_COLFT
AccessioniPrimary (citable) accession number: G0A8U2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: February 4, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.