Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Type I site-specific deoxyribonuclease, HsdR family

Gene

Metme_1967

Organism
Methylomonas methanica (strain MC09)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. Type I site-specific deoxyribonuclease activity Source: InterPro

GO - Biological processi

  1. DNA restriction-modification system Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciMMET857087:GH4A-1990-MONOMER.

Protein family/group databases

REBASEi36271. Mme9ORF1963P.

Names & Taxonomyi

Protein namesi
Submitted name:
Type I site-specific deoxyribonuclease, HsdR familyImported
Gene namesi
Ordered Locus Names:Metme_1967Imported
OrganismiMethylomonas methanica (strain MC09)Imported
Taxonomic identifieri857087 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaMethylococcalesMethylococcaceaeMethylomonas
ProteomesiUP000008888 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01153.
OMAiLAGYHQY.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR021810. DUF3387.
IPR006935. Helicase/UvrB_dom.
IPR014001. Helicase_ATP-bd.
IPR027417. P-loop_NTPase.
IPR007409. Restrct_endonuc_type1_HsdR_N.
IPR004473. Restrct_endonuc_typeI_HsdR.
[Graphical view]
PfamiPF11867. DUF3387. 1 hit.
PF04313. HSDR_N. 1 hit.
PF04851. ResIII. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 6 hits.
TIGRFAMsiTIGR00348. hsdR. 1 hit.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G0A550-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTEDQLEQEA LGWLAEVGYS TLYGPDLAPD GDNPERDNYL QVVLVERLRS
60 70 80 90 100
AIARLNPSIP LAAREDALQQ ILNLEVPGLL AANRHFHRLL VNGVPVEYQK
110 120 130 140 150
DGDTRGDRVR LIEFAEPSSN EWLAINQFAI KGPKHSRRPD IILFINGLPL
160 170 180 190 200
VLLELKNPAD ENADIWKAFG QIQTYKEQIP DVFQYNEVLV VSDGSEARLG
210 220 230 240 250
SLSSDAERFM QWRTIDGITL DPLGQFNELE TLIHGLLNPA TLLDYLRFFV
260 270 280 290 300
LFEDDGGLVK KVAGYHQYHA VRAAIQQVVT ASRPDGNHKG GVVWHTQGSG
310 320 330 340 350
KSITMTCFAA RVMQETAMEN PTIVVITDRN DLDGQLFGVF SLGQDLLREQ
360 370 380 390 400
PVQAETRQDL RAKLDNRPSG GIVFATIQKF MPGADEDSFP VLSDRSNIVV
410 420 430 440 450
IADEAHRTQY GFEAKLKTVK TQQTAANEGR VDMAAEYRGM YQVGYAQHLR
460 470 480 490 500
DALPNATFVA FTGTPVSLED RDTRAVFGEY IHVYDMQQAK EDGATVAIYF
510 520 530 540 550
ESRLAKLALK PEQLPQIDDE VDELAEDEEE DQQAKLKSRW AALEKVVGAE
560 570 580 590 600
PRIASVAADL VAHFEERNKA QDGKAMVVAM SREICVHLYN EIIKLRPDWH
610 620 630 640 650
SDDPEQGAIK IVMTGSASDK ALLRPHIYSK QQKKRLEKRF KDPADPLRLV
660 670 680 690 700
IVRDMWLTGF DAPCVHTLYV DKPMKGHNLM QAIARVNRVF KDKQGGLVVD
710 720 730 740 750
YIGIANELKS ALKDYTASQG RGRPTVDAAE AYAVLEEKLD ILRGILHGYD
760 770 780 790 800
YSDFLTTGHK RLAGAANHVL GQKDGKKRFA DTSLAMSKAF TLCCTLDEAK
810 820 830 840 850
AVREEMAFFQ AVKVILTKPD ISRKKRSDEE RDLAIRQIIN SAVVSEDVVD
860 870 880 890 900
IFEAVGLDKP NIGILDEAFL ADVRNLPERN LAVELLERLL EGEIKSRFAG
910 920 930 940 950
NVVQEKKFSE LLTNVIKRYQ NRAIETAQVI EELIQMAKKF REAAGRGESL
960 970 980 990 1000
GLSEDEIRFY DALADNESAV RELSDDTLKL IAHELTENLR QNITVDWSQR
1010 1020 1030 1040
ESVRAKLRLM VKRILRKYKY PPDQQEAAIE LVLQQAQALG DAWI
Length:1,044
Mass (Da):117,250
Last modified:October 19, 2011 - v1
Checksum:i925220AE41C6FD4C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002738 Genomic DNA. Translation: AEG00380.1.
RefSeqiYP_004512879.1. NC_015572.1.

Genome annotation databases

EnsemblBacteriaiAEG00380; AEG00380; Metme_1967.
KEGGimmt:Metme_1967.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002738 Genomic DNA. Translation: AEG00380.1.
RefSeqiYP_004512879.1. NC_015572.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

REBASEi36271. Mme9ORF1963P.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEG00380; AEG00380; Metme_1967.
KEGGimmt:Metme_1967.

Phylogenomic databases

KOiK01153.
OMAiLAGYHQY.

Enzyme and pathway databases

BioCyciMMET857087:GH4A-1990-MONOMER.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR021810. DUF3387.
IPR006935. Helicase/UvrB_dom.
IPR014001. Helicase_ATP-bd.
IPR027417. P-loop_NTPase.
IPR007409. Restrct_endonuc_type1_HsdR_N.
IPR004473. Restrct_endonuc_typeI_HsdR.
[Graphical view]
PfamiPF11867. DUF3387. 1 hit.
PF04313. HSDR_N. 1 hit.
PF04851. ResIII. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 6 hits.
TIGRFAMsiTIGR00348. hsdR. 1 hit.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09."
    Boden R., Cunliffe M., Scanlan J., Moussard H., Kits K.D., Klotz M., Jetten M., Vuilleumier S., Han J., Peters L., Mikhailova N., Teshima H., Tapia R., Kyrpides N., Ivanova N., Pagani I., Cheng J.-F., Goodwin L.
    , Han C., Hauser L., Land M., Lapidus A., Lucas S., Pitluck S., Woyke T., Stein L.Y., Murrell C.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MC09.
  2. "Complete sequence of Methylomonas methanica MC09."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Teshima H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Stein L., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MC09Imported.

Entry informationi

Entry nameiG0A550_METMM
AccessioniPrimary (citable) accession number: G0A550
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 29, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.