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F9ZKP6

- F9ZKP6_9PROT

UniProt

F9ZKP6 - F9ZKP6_9PROT

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Protein

Ribulose bisphosphate carboxylase large chain

Gene

cbbL

Organism
Nitrosomonas sp. AL212
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.UniRule annotation

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotation
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotation

Cofactori

Note: Binds 1 magnesium ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei130 – 1301Substrate; in homodimeric partnerUniRule annotation
Binding sitei180 – 1801SubstrateUniRule annotation
Active sitei182 – 1821Proton acceptorUniRule annotation
Binding sitei184 – 1841SubstrateUniRule annotation
Metal bindingi208 – 2081Magnesium; via carbamate groupUniRule annotation
Metal bindingi210 – 2101MagnesiumUniRule annotation
Metal bindingi211 – 2111MagnesiumUniRule annotation
Active sitei300 – 3001Proton acceptorUniRule annotation
Binding sitei301 – 3011SubstrateUniRule annotation
Binding sitei333 – 3331SubstrateUniRule annotation
Sitei340 – 3401Transition state stabilizerUniRule annotation
Binding sitei385 – 3851SubstrateUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. monooxygenase activity Source: UniProtKB-KW
  3. ribulose-bisphosphate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. reductive pentose-phosphate cycle Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported, MonooxygenaseUniRule annotation, Oxidoreductase

Keywords - Biological processi

Calvin cycleUniRule annotation, Carbon dioxide fixationUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciNSP153948:GHZ8-2819-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase large chainUniRule annotation (EC:4.1.1.39UniRule annotation)
Short name:
RuBisCO large subunitUniRule annotation
Gene namesi
Name:cbbLUniRule annotation
ORF Names:NAL212_2942Imported
OrganismiNitrosomonas sp. AL212Imported
Taxonomic identifieri153948 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNitrosomonadalesNitrosomonadaceaeNitrosomonas
ProteomesiUP000001629: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei208 – 2081N6-carboxylysineUniRule annotation

Interactioni

Subunit structurei

Heterohexadecamer of 8 large chains and 8 small chains.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliF9ZKP6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO large chain family. Type I subfamily.UniRule annotation

Phylogenomic databases

KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F9ZKP6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASQTMKEGK ERYKSGVIPY KKMGYWEPAY VPKDTDVIAM FRITPQPGVD
60 70 80 90 100
HEEAAAAVAG ESSTATWTVV WTDRLTACEL YRAKAYKSEL VPNTGPGTDN
110 120 130 140 150
EAQYFAYIAY DIDLFEEGSI ANLTASIIGN VFGFKAVKAL RLEDMRIPVA
160 170 180 190 200
YLKTFQGPAT GIVVERERLD KFGRPLLGAT TKPKLGLSGR NYGRVVYEGL
210 220 230 240 250
KGGLDFMKDD ENINSQPFMH WRDRFLYCME AVNKASAATG EVKGHYLNVT
260 270 280 290 300
AGTMEDMYER AEFAKSLGSV IVMIDLVIGY TAIQSMAKWA RRNDMILHLH
310 320 330 340 350
RAGNSTYSRQ KNHGMNFRVI CKWMRMAGVD HIHAGTVVGK LEGDPLMIKG
360 370 380 390 400
FYDTLRETRT EKSLEHGLFF DQDWASLNKC MPVASGGIHA GQMHQLIDYL
410 420 430 440 450
GEDVILQFGG GTIGHPQGIQ AGAVANRVAL EAMIMARNEG RDYVKEGPQI
460 470 480 490
LADAAKWCTP LKQALDTWKD ITFNYDSTDT ADFVPSTTAN A
Length:491
Mass (Da):54,502
Last modified:October 19, 2011 - v1
Checksum:iB931FB461D8CAB98
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002552 Genomic DNA. Translation: ADZ27727.1.
RefSeqiWP_013648677.1. NC_015222.1.
YP_004295889.1. NC_015222.1.

Genome annotation databases

EnsemblBacteriaiADZ27727; ADZ27727; NAL212_2942.
GeneIDi10299483.
KEGGinit:NAL212_2942.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002552 Genomic DNA. Translation: ADZ27727.1 .
RefSeqi WP_013648677.1. NC_015222.1.
YP_004295889.1. NC_015222.1.

3D structure databases

ProteinModelPortali F9ZKP6.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADZ27727 ; ADZ27727 ; NAL212_2942 .
GeneIDi 10299483.
KEGGi nit:NAL212_2942.

Phylogenomic databases

KOi K01601.

Enzyme and pathway databases

BioCyci NSP153948:GHZ8-2819-MONOMER.

Family and domain databases

Gene3Di 3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPi MF_01338. RuBisCO_L_type1.
InterProi IPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view ]
Pfami PF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view ]
SUPFAMi SSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEi PS00157. RUBISCO_LARGE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Nitrosomonas sp. AL212."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Chertkov O., Held B., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Suwa Y.
    , Klotz M.G., Bollmann A., Stein L.Y., Laanbroek H.J., Arp D.J., Norton J.M., Woyke T.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: AL212Imported.

Entry informationi

Entry nameiF9ZKP6_9PROT
AccessioniPrimary (citable) accession number: F9ZKP6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: November 26, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Miscellaneous

The basic functional RuBisCO is composed of a large chain homodimer in a "head-to-tail" conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric "cap" on each end of the "barrel".UniRule annotation

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3