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Protein
Submitted name:

Lytic transglycosylase catalytic

Gene

Odosp_0056

Organism
Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / JCM 15291 / NCTC 10825 / 1651/6) (Bacteroides splanchnicus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. lytic transglycosylase activity Source: InterPro

GO - Biological processi

  1. peptidoglycan metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciOSPL709991:GI68-57-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Lytic transglycosylase catalyticImported
Gene namesi
Ordered Locus Names:Odosp_0056Imported
OrganismiOdoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / JCM 15291 / NCTC 10825 / 1651/6) (Bacteroides splanchnicus)Imported
Taxonomic identifieri709991 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesPorphyromonadaceaeOdoribacter
ProteomesiUP000006657: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919 PotentialImportedAdd
BLAST
Chaini20 – 524505 PotentialImportedPRO_5000773709Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliF9ZC31.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

KOiK08307.
OMAiIREVNNI.

Family and domain databases

Gene3Di3.10.350.10. 2 hits.
InterProiIPR018392. LysM_dom.
IPR023346. Lysozyme-like_dom.
IPR008258. TGlycosylase-like_SLT.
IPR000189. Transglyc_AS.
[Graphical view]
PfamiPF01476. LysM. 2 hits.
PF01464. SLT. 1 hit.
[Graphical view]
SMARTiSM00257. LysM. 2 hits.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF54106. SSF54106. 2 hits.
PROSITEiPS00922. TRANSGLYCOSYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

F9ZC31-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIRFLFFAVS CLLYHAVCGV NVVSKDSVAS VEQDTVIENQ IITDSIPESF
60 70 80 90 100
LEKLDYYYTS WYTGKRDSTY YVDSLCIAES CKNIVPCNDS VYLLRLDSLQ
110 120 130 140 150
SAVPLSFNDI VRTYIELYTV KKRLQVANML GRSEYYFPIF EEALDAECMP
160 170 180 190 200
LELKYLPVIE SALNPKALSR AGACGLWQFM YGTGKMYKLE INSYVDERRD
210 220 230 240 250
PVKATQAAVR YLNDLYAIYE DWILVIAAYN CGPGNVNKAI RRSGGKKNYW
260 270 280 290 300
DIYYHLPRET RGYVPAFIAA NYVFAYYKEH GIFPIESTLP PMCDSIMVND
310 320 330 340 350
ALHFEQIAAK LDFSVEELRD LNPQYRADVI PAGFGKSYAL KMPYNHIGSF
360 370 380 390 400
IDNQDSIFAC NRSKYFNDND RTADPKNRIK VHAQALGQDG RARLVYTVKS
410 420 430 440 450
GDVPGAIAMK FNVRLADLKY WNNLNKRMTI RPGQKLVVYV PEKKANQYKN
460 470 480 490 500
KAAYTGKEDN VASAPKVETI DGEFVLYTVR KGENLWSIAK KYPGVSNKDI
510 520
MRWNGISENQ VKDIRPGQKL KIKI
Length:524
Mass (Da):59,841
Last modified:October 19, 2011 - v1
Checksum:i861E040689DACB7E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002544 Genomic DNA. Translation: ADY31171.1.
RefSeqiWP_013610418.1. NC_015160.1.
YP_004251351.1. NC_015160.1.

Genome annotation databases

EnsemblBacteriaiADY31171; ADY31171; Odosp_0056.
GeneIDi10251760.
KEGGiosp:Odosp_0056.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002544 Genomic DNA. Translation: ADY31171.1.
RefSeqiWP_013610418.1. NC_015160.1.
YP_004251351.1. NC_015160.1.

3D structure databases

ProteinModelPortaliF9ZC31.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADY31171; ADY31171; Odosp_0056.
GeneIDi10251760.
KEGGiosp:Odosp_0056.

Phylogenomic databases

KOiK08307.
OMAiIREVNNI.

Enzyme and pathway databases

BioCyciOSPL709991:GI68-57-MONOMER.

Family and domain databases

Gene3Di3.10.350.10. 2 hits.
InterProiIPR018392. LysM_dom.
IPR023346. Lysozyme-like_dom.
IPR008258. TGlycosylase-like_SLT.
IPR000189. Transglyc_AS.
[Graphical view]
PfamiPF01476. LysM. 2 hits.
PF01464. SLT. 1 hit.
[Graphical view]
SMARTiSM00257. LysM. 2 hits.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
SSF54106. SSF54106. 2 hits.
PROSITEiPS00922. TRANSGLYCOSYLASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 29572 / DSM 20712 / JCM 15291 / NCTC 10825 / 1651/6Imported.

Entry informationi

Entry nameiF9ZC31_ODOSD
AccessioniPrimary (citable) accession number: F9ZC31
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: March 4, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.