Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

1,4-alpha-glucan branching enzyme

Gene

apuB

Organism
Bifidobacterium breve (strain NCIMB 8807 / UCC2003)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.SAAS annotation

Pathwayi: glycogen biosynthesis

This protein is involved in the pathway glycogen biosynthesis, which is part of Glycan biosynthesis.SAAS annotation
View all proteins of this organism that are known to be involved in the pathway glycogen biosynthesis and in Glycan biosynthesis.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidaseImported, GlycosyltransferaseSAAS annotation, Hydrolase, Transferase
Biological processGlycogen biosynthesisSAAS annotation

Enzyme and pathway databases

UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM25. Carbohydrate-Binding Module Family 25.
CBM41. Carbohydrate-Binding Module Family 41.
CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzymeSAAS annotation (EC:2.4.1.18SAAS annotation)
Gene namesi
Name:apuBImported
Ordered Locus Names:Bbr_0123Imported
OrganismiBifidobacterium breve (strain NCIMB 8807 / UCC2003)Imported
Taxonomic identifieri326426 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaBifidobacterialesBifidobacteriaceaeBifidobacterium
Proteomesi
  • UP000000297 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei1670 – 1690HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 34Sequence analysisAdd BLAST34
ChainiPRO_500339578135 – 17081,4-alpha-glucan branching enzymeSequence analysisAdd BLAST1674

Interactioni

Protein-protein interaction databases

STRINGi326426.Bbr_0123.

Structurei

3D structure databases

ProteinModelPortaliF9Y041.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini52 – 413AamyInterPro annotationAdd BLAST362
Domaini422 – 502Aamy_CInterPro annotationAdd BLAST81
Domaini531 – 608CBM_25InterPro annotationAdd BLAST78

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotationSAAS annotation

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4108E1W. Bacteria.
COG0366. LUCA.
COG1523. LUCA.
KOiK01200.
OrthoDBiPOG091H0DZH.

Family and domain databases

CDDicd10315. CBM41_pullulanase. 2 hits.
Gene3Di2.60.40.10. 2 hits.
InterProiView protein in InterPro
IPR006048. A-amylase/branching_C.
IPR031319. A-amylase_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR005085. CBM25.
IPR005323. CBM41_pullulanase.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR011840. PulA_typeI.
PfamiView protein in Pfam
PF00128. Alpha-amylase. 2 hits.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
PF03714. PUD. 2 hits.
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiView protein in SMART
SM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
SM01066. CBM_25. 1 hit.
SUPFAMiSSF49452. SSF49452. 2 hits.
SSF51445. SSF51445. 2 hits.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR02104. pulA_typeI. 1 hit.

Sequencei

Sequence statusi: Complete.

F9Y041-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVRRFSSLA KRLAVTGIAV AMSATTLVAL PASADETEAN AQARTSVGAP
60 70 80 90 100
GDVIAIAFQT NWNSVAKECT EAYGPEGVGY VQVSPPMESI QGTEWWTSYQ
110 120 130 140 150
PVSYKLDSKL GTEAEFKTMI ATCNAAGVEI IADSVINHTT GADQGEGTGV
160 170 180 190 200
AGSKYDGEGN FPAIPYTKEN FHDCTKNIGD YTNADEVQNC RLTSLQDLDT
210 220 230 240 250
SQEYVQDKLA DYMNRLLDLG VYGFRVDAVK HIATADVAAI KAKLAEKSGR
260 270 280 290 300
NADDIFFEQE VIGNASEAAE IQPSNYVANG KVSEFNFTNH LSVAFAGDIT
310 320 330 340 350
DASKGLAKVG GDGWVSSDKA AVWVTNWDTE RGSSITYKKG SKYLLANAFM
360 370 380 390 400
LAYDYGQPHI YSGYYFDNSD DGAPGATETS VPDMECPTDG SMTSGTWQCA
410 420 430 440 450
ERWTAIRGMI GFHNAVNGTD VTNWKAYDTN VLGFGRGDVG YLALNNSADD
460 470 480 490 500
SKQTFQTSLP AGEYCNVYAT GDCSATVTVK DDGTFDATLA KNSAIAIYAG
510 520 530 540 550
ATKDSWTGTT KSDPSDPDLS VNDETKKAAA DTSRTIYYKL PDGWKQAYLH
560 570 580 590 600
YGIDGWAEQG HELMADAGNG WVKFTVDPKG KSFEYVFTDG GDNWDNPNGG
610 620 630 640 650
GNYTAQGHWT AVADHEASAG VPSDVQSYQP KTKVIVHYKP AEGDAVADRG
660 670 680 690 700
VYMWGTDKNG ATLNGAWHAF TGEDSYGKVF ETTIDGAYDA AKIGVIVTTE
710 720 730 740 750
GWDKVGGDRT IDGSTGTAEI WVDGANPDET LTEAPDGYKK AANQIDVTIH
760 770 780 790 800
YHRLADDYTS EDGMKAWDIW GWADGVNGAA YPFTEHDDYG LIAKYTLKGS
810 820 830 840 850
GMSTPQFIVR YGGDSWEAKD PNDENRTIPQ SAITVNADGT ASAEIWLVQG
860 870 880 890 900
DTTIYTNGTL YDAKGMIVSA EMTDFNTITV KLNKALTIDK PADAVSVEGV
910 920 930 940 950
KIKDVKASGN TVTITTADNL DVTKAYKVTI EDYGTQNVSL GAVVRSDAFD
960 970 980 990 1000
KKYAYDGDDL GVTYKAEKST FKLWAPTATK VTLRLYADST DPKAAQTDAV
1010 1020 1030 1040 1050
TLEKSGKKGV WTFAVDKDLK DYAYDYELTF ADGTVNTSAD PYATAAVANG
1060 1070 1080 1090 1100
ERSVVLSDKE KGDAGKRMAS FSKPTDAIIT EANVRDMTIN PNSGVSEANR
1110 1120 1130 1140 1150
GKYLGFVEEG TTVDGKQGAA STGIDYLKSL GVTHVQIMPV YDYGSVDETG
1160 1170 1180 1190 1200
DLSYGAQYNW GYDPENYNVP EGSYSSDPSD PSARVKEMKQ MVSGLHKNGL
1210 1220 1230 1240 1250
YVVMDVVYNH VYNASEHAFN KTVPGYYFRY DANGNLTNGS GCGNDVASER
1260 1270 1280 1290 1300
AMARKYIVDS VKYWATEYNV DGFRFDLMGL IDQTTMNQVR AALDEIDPSI
1310 1320 1330 1340 1350
LVIGEGWDMT DAIGNQETTQ PNASKVKGVA FFNDSLRDAI KGSVFSDEDT
1360 1370 1380 1390 1400
GFIAGKADKE NLIATNVLGC NNKREGIDEN GHCNNGTADT NYGGADQVVQ
1410 1420 1430 1440 1450
YVEIHDNLTL YDKLVKSAPN DSEETRLARA KLADSLILLS QGIADMQFGQ
1460 1470 1480 1490 1500
EFLRTKGGNG NSYNAGDAVN AIDWNRTVEQ AGSVNYVKGL IALRKSIKNL
1510 1520 1530 1540 1550
HLSSYDDIAK NMTVLQQSDG VVAYQLKDGG DTYVVVFNAN ESAATVEAVP
1560 1570 1580 1590 1600
AGKYTVLAAD GKVTETQDKN AATTVGADGY QAGALAAAVL KAGADDDSTK
1610 1620 1630 1640 1650
PDGGKDDSSK PGNNDGKDDN QSGGTATPGT PGDSGNGNGQ TGDGNASNGA
1660 1670 1680 1690 1700
SDTAAGQSQQ FGAAALPNTG VALSVMAVAV LVMTAAGMLL QRFSKGSNVV

NSKEGSEQ
Length:1,708
Mass (Da):182,361
Last modified:October 19, 2011 - v1
Checksum:iA0ABC7A940AFBA93
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000303 Genomic DNA. Translation: ABE94835.1.
RefSeqiWP_015438259.1. NC_020517.1.

Genome annotation databases

EnsemblBacteriaiABE94835; ABE94835; Bbr_0123.
KEGGibbru:Bbr_0123.
PATRICifig|326426.4.peg.135.

Similar proteinsi

Entry informationi

Entry nameiF9Y041_BIFBU
AccessioniPrimary (citable) accession number: F9Y041
Entry historyiIntegrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: September 27, 2017
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported