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Protein
Submitted name:

Histone deacetylase

Gene

HDA2404

Organism
Zymoseptoria tritici (strain CBS 115943 / IPO323) (Speckled leaf blotch fungus) (Septoria tritici)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. chromatin binding Source: EnsemblFungi
  2. histone deacetylase activity (H3-K14 specific) Source: EnsemblFungi

GO - Biological processi

  1. chromatin organization involved in regulation of transcription Source: EnsemblFungi
  2. chromatin silencing at centromere Source: EnsemblFungi
  3. chromatin silencing at rDNA Source: EnsemblFungi
  4. chromatin silencing at silent mating-type cassette Source: EnsemblFungi
  5. chromatin silencing at telomere Source: EnsemblFungi
  6. gene silencing by RNA Source: EnsemblFungi
  7. gene silencing involved in chronological cell aging Source: EnsemblFungi
  8. negative regulation of chromatin silencing involved in replicative cell aging Source: EnsemblFungi
  9. negative regulation of transcription by transcription factor localization Source: EnsemblFungi
  10. negative regulation of transcription from RNA polymerase II promoter Source: EnsemblFungi
  11. nucleosome positioning Source: EnsemblFungi
  12. positive regulation of transcription from RNA polymerase II promoter Source: EnsemblFungi
  13. regulation of chromatin silencing at telomere Source: EnsemblFungi
  14. regulation of histone methylation Source: EnsemblFungi
Complete GO annotation...

Keywords - Molecular functioni

HydrolaseSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Histone deacetylaseImported
Gene namesi
Name:HDA2404Imported
ORF Names:MYCGRDRAFT_37223Imported
OrganismiZymoseptoria tritici (strain CBS 115943 / IPO323) (Speckled leaf blotch fungus) (Septoria tritici)Imported
Taxonomic identifieri336722 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaDothideomycetesDothideomycetidaeCapnodialesMycosphaerellaceaeZymoseptoria
ProteomesiUP000008062 Componenti: Chromosome 2

Subcellular locationi

GO - Cellular componenti

  1. HDA1 complex Source: EnsemblFungi
  2. mating-type region heterochromatin Source: EnsemblFungi
  3. nuclear pericentric heterochromatin Source: EnsemblFungi
  4. nuclear telomeric heterochromatin Source: EnsemblFungi
  5. nucleolar chromatin Source: EnsemblFungi
  6. rDNA heterochromatin Source: EnsemblFungi
  7. SHREC complex Source: EnsemblFungi
Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliF9X3X4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiF9X3X4.
KOiK11407.
OrthoDBiEOG75B8GB.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR019154. Arb2_domain.
IPR000286. His_deacetylse.
IPR023801. His_deacetylse_dom.
IPR017321. Hist_deAcase_II_yeast.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF09757. Arb2. 1 hit.
PF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037919. HDAC_II_yeast. 1 hit.
PRINTSiPR01270. HDASUPER.

Sequencei

Sequence statusi: Complete.

F9X3X4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQSTEVFGAN DQAFKKPGLG PYPKAPFSDG SRATPPLKGA GLKREPDDFT
60 70 80 90 100
IFVRKDGPRE PKFDALPYAS AQTGLIYDVR MRFHVESEPE EDLHPEDPRR
110 120 130 140 150
IHAIFEAFVN AGLVWRQSEV GPPSGYYMGR IDTRMVTKDE VCLVHTENHW
160 170 180 190 200
NWVQSLSRKE PDELRDELQH PPHRLDSVYL STSTPYCAGL SAGGAIEACR
210 220 230 240 250
AIIMGKVKNV FAVIRPPGHH AEREDAKGFC FYDNVSIATK VCQKEFGDKC
260 270 280 290 300
RKVLILDWDV HHGNGIQQAN YSDPNVLYIS LHVHKKGTFY PEKSYRDDRV
310 320 330 340 350
SYGDHLHCGE GAGLGKNVNI PWSKMGMGDA DYVYAFQQVV MPIATEFNPD
360 370 380 390 400
LVIIAAGFDA AEGDMLGGCK VTPAGYAHMT HMLMSLAKGK MAVCLEGGYN
410 420 430 440 450
LDAIARSSCA VGRTMMGEPP DRLEDLAASR SGIDDVKQVL RQQSRFWASL
460 470 480 490 500
HPKDPASMLP GPPEGERMHN VVRRWQADTM FTDYGMTPLY VHRERLAKEF
510 520 530 540 550
ENQVLATREF GKERPLLVIL HDPPEMIASP DPRTGKVELH NTWLTDFVKT
560 570 580 590 600
YVDEAIKHKF GVIDVNLPKH IAEYDSTNQE HKESESTEAR IAEATELLTY
610 620 630 640 650
VWENYIELDD PTHVFLMGTN TGHGAILNFI KRHEDRAQKM ITKAISFVED
660 670 680 690 700
VPLMSCKSPT NDYLPGWYYA TSLVFVADQH NYFETEYYRK PKKRFGRVIR
710 720 730 740 750
SQELCISDML KEQRKAVFDC LLTETEEWRR TAPMEVVEAE PQVLSPSRLP
760 770 780 790
PVGNFAPAAR NSAAAMEPSR MSNGGTSPSG LPPMGNFASR PPHDR
Length:795
Mass (Da):89,394
Last modified:October 19, 2011 - v1
Checksum:i8E44EF4AC92C1962
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM001197 Genomic DNA. Translation: EGP90054.1.
RefSeqiXP_003855078.1. XM_003855030.1.

Genome annotation databases

EnsemblFungiiMycgr3T37223; Mycgr3P37223; Mycgr3G37223.
GeneIDi13400955.
KEGGiztr:MYCGRDRAFT_37223.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM001197 Genomic DNA. Translation: EGP90054.1.
RefSeqiXP_003855078.1. XM_003855030.1.

3D structure databases

ProteinModelPortaliF9X3X4.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiMycgr3T37223; Mycgr3P37223; Mycgr3G37223.
GeneIDi13400955.
KEGGiztr:MYCGRDRAFT_37223.

Phylogenomic databases

InParanoidiF9X3X4.
KOiK11407.
OrthoDBiEOG75B8GB.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR019154. Arb2_domain.
IPR000286. His_deacetylse.
IPR023801. His_deacetylse_dom.
IPR017321. Hist_deAcase_II_yeast.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF09757. Arb2. 1 hit.
PF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037919. HDAC_II_yeast. 1 hit.
PRINTSiPR01270. HDASUPER.
ProtoNetiSearch...

Publicationsi

  1. "Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis."
    Goodwin S.B., Ben M'barek S., Dhillon B., Wittenberg A.H.J., Crane C.F., Hane J.K., Foster A.J., Van der Lee T.A.J., Grimwood J., Aerts A., Antoniw J., Bailey A., Bluhm B., Bowler J., Bristow J., van der Burgt A., Canto-Canche B., Churchill A.C.L.
    , Conde-Ferraez L., Cools H.J., Coutinho P.M., Csukai M., Dehal P., De Wit P., Donzelli B., van de Geest H.C., van Ham R.C.H.J., Hammond-Kosack K.E., Henrissat B., Kilian A., Kobayashi A.K., Koopmann E., Kourmpetis Y., Kuzniar A., Lindquist E., Lombard V., Maliepaard C., Martins N., Mehrabi R., Nap J.P.H., Ponomarenko A., Rudd J.J., Salamov A., Schmutz J., Schouten H.J., Shapiro H., Stergiopoulos I., Torriani S.F.F., Tu H., de Vries R.P., Waalwijk C., Ware S.B., Wiebenga A., Zwiers L.-H., Oliver R.P., Grigoriev I.V., Kema G.H.J.
    PLoS Genet. 7:E1002070-E1002070(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CBS 115943 / IPO323Imported.

Entry informationi

Entry nameiF9X3X4_ZYMTI
AccessioniPrimary (citable) accession number: F9X3X4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 1, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.