F9X2V5 (F9X2V5_MYCGM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617

Gene names

ORF Names:

MYCGRDRAFT_68344 EMBL EGP90536.1

Organism

Mycosphaerella graminicola (strain CBS 115943 / IPO323) (Speckled leaf blotch fungus) (Septoria tritici) [Complete proteome]

Taxonomic identifier

336722 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Ascomycota › saccharomyceta › Pezizomycotina › leotiomyceta › dothideomyceta › Dothideomycetes › Dothideomycetidae › Capnodiales › Mycosphaerellaceae › Zymoseptoria › Mycosphaerella graminicola

Protein attributes

Sequence length	964 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617
Sequence similarities	Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Ontologies

Keywords
Biological process	DNA damage DNA recombination RuleBase RU000617 DNA repair RuleBase RU000617 DNA replication RuleBase RU000617
Ligand	ATP-binding RuleBase RU000617 Nucleotide-binding
Molecular function	Ligase RuleBase RU000617
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F9X2V5 [UniParc]. Last modified October 19, 2011. Version 1. Checksum: C1CE5B7451D732CF	FASTA	964	110,023
	10 20 30 40 50 60 MYGHGSMTQD EMDEKYPGRP KNHAKTLPFH ELYTTLFNPL NENKKKPTGP SIARKKEGPH 70 80 90 100 110 120 GQGQAPHEAR RSIIDRFISR WRKQVGNDIF PAIRLIVPEK DRERGMYGIK EMTLGKLLVR 130 140 150 160 170 180 VMKINKDSED GYNLLHWKLP GVKASSAMAG DFAGRCFEVI SKRPMRQTPG DMTIAQVNEM 190 200 210 220 230 240 LDRLSVAQKE ENQRPIIEEF YNRMCAEEMM WLIRMILRQM KVGASERTFF DVWHQDAENL 250 260 270 280 290 300 FNISSNLRRV CWELWDPDVR LEGDSAGIAL MQCFQPQLAA FQMRSMEQMV ARMKPTEEDA 310 320 330 340 350 360 EFWIEEKLDG ERMQLHMVED DQIPGGKRFG FWSRKAKDYT YLYGKHFEDD NSALTRHIKN 370 380 390 400 410 420 AFNEGVRNII LDGEMITWDP KEQALVPFGT LKTAALSEQQ NPFSTGNRPV FRIFDCLFLN 430 440 450 460 470 480 DKDLTHYTLR VRHEALLKSV TSIDQRMEIH EHQKATQASE IEPVLRKVVA EASEGLVLKN 490 500 510 520 530 540 PRSEYRLNER NDDWIKVKPE YMTEFGESLD CIVVGGYYGS GKRGGGLSSF LCGLKPQQAI 550 560 570 580 590 600 FSSQNRNINP QMVLSFFKVG GGFAASDYAE IRHRTEGKWT DWNAKKPPTD WVVLGGGDRQ 610 620 630 640 650 660 FEKPDVWIKP EDSIVLSVKA ASVTGTTQFA TGCTLRFPRF KKLRTDKDWT QALTQDEFNA 670 680 690 700 710 720 LRKRVEAEVE EKKMKIDDTR KQKVGPKRKK RELVIQGQED AVRAPYAGPA TKVFEGLSFF 730 740 750 760 770 780 VMTEAPKPLK KTKAELEQLI KANGGNVVAS EKDPDTIIIA DRNMVKVASI SKHDKRSIIR 790 800 810 820 830 840 PSWLLDCVRQ SEIDIGRPAL LLPLEKFHLF HTASAEQGRF DDNVDEYGDS YARDITTEEL 850 860 870 880 890 900 LALCNAMPSK MEDGLNPDEV LEQFHDHGHE LDAMKGFMFR GTTAYFDDVP AEAIRLFKFA 910 920 930 940 950 960 GGQIADSIED DQLTHVVLHT GCSPAATRKA VSSKQQLPRI VTESWVADSW SEATRLDEEQ FVPS

References

[1]

"Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis." Goodwin S.B., Ben M'barek S., Dhillon B., Wittenberg A.H.J., Crane C.F., Hane J.K., Foster A.J., Van der Lee T.A.J., Grimwood J., Aerts A., Antoniw J., Bailey A., Bluhm B., Bowler J., Bristow J., van der Burgt A., Canto-Canche B., Churchill A.C.L. , Conde-Ferraez L., Cools H.J., Coutinho P.M., Csukai M., Dehal P., De Wit P., Donzelli B., van de Geest H.C., van Ham R.C.H.J., Hammond-Kosack K.E., Henrissat B., Kilian A., Kobayashi A.K., Koopmann E., Kourmpetis Y., Kuzniar A., Lindquist E., Lombard V., Maliepaard C., Martins N., Mehrabi R., Nap J.P.H., Ponomarenko A., Rudd J.J., Salamov A., Schmutz J., Schouten H.J., Shapiro H., Stergiopoulos I., Torriani S.F.F., Tu H., de Vries R.P., Waalwijk C., Ware S.B., Wiebenga A., Zwiers L.-H., Oliver R.P., Grigoriev I.V., Kema G.H.J. PLoS Genet. 7:E1002070-E1002070(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CBS 115943 / IPO323.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM001197 Genomic DNA. Translation: EGP90536.1.
RefSeq	XP_003855560.1. XM_003855512.1.
3D structure databases
ProteinModelPortal	F9X2V5.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblFungi	Mycgr3T68344; Mycgr3P68344; Mycgr3G68344.
GeneID	13399568.
KEGG	ztr:MYCGRDRAFT_68344.
Phylogenomic databases
KO	K10777.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR001357. BRCT_dom. IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF00533. BRCT. 1 hit. PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SMART	SM00292. BRCT. 2 hits. [Graphical view]
SUPFAM	SSF52113. BRCT. 2 hits. SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS50172. BRCT. 2 hits. PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F9X2V5_MYCGM

Accession

Primary (citable) accession number: F9X2V5

Entry history

Integrated into UniProtKB/TrEMBL:	October 19, 2011
Last sequence update:	October 19, 2011
Last modified:	April 3, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)