DNA-binding protein Sto12a - Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)

Contribute

Read comments (?) or add your own

F9VNN8 (F9VNN8_SULTO) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 13. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

text xml rdf/xml gff fasta

to top of page

Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

to top of page

Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
DNA-binding protein Sto12a EMBL BAK54684.1

Gene names

Name:	sto12a EMBL BAK54684.1
Ordered Locus Names:	STK_18890

Organism

Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) [Complete proteome] [HAMAP] EMBL BAK54684.1

Taxonomic identifier

Taxonomic lineage

Archaea › Crenarchaeota › Thermoprotei › Sulfolobales › Sulfolobaceae › Sulfolobus ›

Protein attributes

Sequence length	109 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	DNA-binding EMBL BAK54684.1
Technical term	3D-structure PDB 2D1H Complete proteome
Gene Ontology (GO)
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

F9VNN8 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: 935C8D7EDB0D3088
Show »

109

12,530

        10         20         30         40         50         60 
MMKEKLESKK DEIRCCYKIT DTDVAVLLKM VEIEKPITSE ELADIFKLSK TTVENSLKKL 

        70         80         90        100 
IELGLVVRTK TEGKKIGRPK YYYSISSNIL EKIRNDLLNC AKRMELAAT

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of an aerobic thermoacidophilic Crenarchaeon, Sulfolobus tokodaii strain7." Kawarabayasi Y., Hino Y., Horikawa H., Jin-no K., Takahashi M., Sekine M., Baba S., Ankai A., Kosugi H., Hosoyama A., Fukui S., Nagai Y., Nishijima K., Otsuka R., Nakazawa H., Takamiya M., Kato Y., Yoshizawa T. Kikuchi H. DNA Res. 8:123-140(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 16993 / JCM 10545 / NBRC 100140 / 7.
[2]	"The putative DNA-binding protein Sto12a from the thermoacidophilic archaeon Sulfolobus tokodaii contains intrachain and interchain disulfide bonds." Shinkai A., Sekine S., Urushibata A., Terada T., Shirouzu M., Yokoyama S. J. Mol. Biol. 372:1293-1304(2007) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.05 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

BA000023 Genomic DNA. Translation: BAK54684.1.

RefSeq

NP_377872.1. NC_003106.2.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2D1H	X-ray	2.05	A/B	1-109	[»]

ProteinModelPortal

SMR

F9VNN8. Positions 1-109.

ModBase

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

BAK54684; BAK54684; STK_18890.

GeneID

KEGG

Organism-specific databases

CMR

Family and domain databases

Gene3D

1.10.10.10. 1 hit.

InterPro

IPR002831. Tscrpt_reg_TrmB_N.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]

Pfam

PF01978. TrmB. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

F9VNN8_SULTO

Accession

Primary (citable) accession number: F9VNN8

Entry history

Integrated into UniProtKB/TrEMBL:	October 19, 2011
Last sequence update:	October 19, 2011
Last modified:	May 1, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

to top of page

Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info