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F9VAA5 (F9VAA5_LACGT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length200 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + thymidine = ADP + thymidine 5'-phosphate. HAMAP-Rule MF_00124 RuleBase RU000544 SAAS SAAS020634

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00124 SAAS SAAS020633

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00124 SAAS SAAS020633.

Sequence similarities

Belongs to the thymidine kinase family. HAMAP-Rule MF_00124 RuleBase RU004165

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding9 – 168ATP By similarity HAMAP-Rule MF_00124
Nucleotide binding85 – 884ATP By similarity HAMAP-Rule MF_00124

Sites

Active site861Proton acceptor By similarity HAMAP-Rule MF_00124
Metal binding1431Zinc By similarity HAMAP-Rule MF_00124
Metal binding1461Zinc By similarity HAMAP-Rule MF_00124
Metal binding1801Zinc By similarity HAMAP-Rule MF_00124
Metal binding1831Zinc By similarity HAMAP-Rule MF_00124

Sequences

Sequence LengthMass (Da)Tools
F9VAA5 [UniParc].

Last modified October 19, 2011. Version 1.
Checksum: 824133F4C51D6F98

FASTA20022,849
        10         20         30         40         50         60 
MAQLYFKYGS MNSGKSIEIL KVAHNYEEQG KPVLIMTSSL DTRAGVGIVA SRIGMSSEAV 

        70         80         90        100        110        120 
AIDDTMNVYE YIENLPIRPF CVLIDEAQFL NKQNIYDLAR VVDDLNVPVM AFGLKNDFRN 

       130        140        150        160        170        180 
ELFEGSKYLL LLADKIEEIK TICWYCSKKA TMVLRMVEGE PVYEGEQLQI GGNESYIPVC 

       190        200 
RKHYFHPLKK MESNRINEEI 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence and comparative analysis of the fish pathogen Lactococcus garvieae."
Morita H., Toh H., Oshima K., Yoshizaki M., Kawanishi M., Nakaya K., Suzuki T., Miyauchi E., Ishii Y., Tanabe S., Murakami M., Hattori M.
PLoS ONE 6:E23184-E23184(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49156 EMBL BAK59046.1 and ATCC 49156 / DSM 6783 / NCIMB 13208 / YT-3.
[2]"The Genome Sequence of Lactococcus garvieae ATCC_49156 (Illumina only assembly)."
The Broad Institute Genomics Platform, The Broad Institute Genome Sequencing Center for Infectious Disease
Earl A., Russ C., Gilmore M., Surin D., Walker B., Young S., Zeng Q., Gargeya S., Fitzgerald M., Haas B., Abouelleil A., Allen A.W., Alvarado L., Arachchi H.M., Berlin A.M., Chapman S.B., Gainer-Dewar J., Goldberg J. expand/collapse author list , Griggs A., Gujja S., Hansen M., Howarth C., Imamovic A., Ireland A., Larimer J., McCowan C., Murphy C., Pearson M., Poon T.W., Priest M., Roberts A., Saif S., Shea T., Sisk P., Sykes S., Wortman J., Nusbaum C., Birren B.
Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 49156 EMBL EOT32891.1.
[3]"The Genome Sequence of Lactococcus garvieae ATCC_49156 (PacBio/Illumina hybrid assembly)."
The Broad Institute Genomics Platform, The Broad Institute Genome Sequencing Center for Infectious Disease
Earl A., Russ C., Gilmore M., Surin D., Walker B., Young S., Zeng Q., Gargeya S., Fitzgerald M., Haas B., Abouelleil A., Allen A.W., Alvarado L., Arachchi H.M., Berlin A.M., Chapman S.B., Gainer-Dewar J., Goldberg J. expand/collapse author list , Griggs A., Gujja S., Hansen M., Howarth C., Imamovic A., Ireland A., Larimer J., McCowan C., Murphy C., Pearson M., Poon T.W., Priest M., Roberts A., Saif S., Shea T., Sisk P., Sykes S., Wortman J., Nusbaum C., Birren B.
Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 49156 EMBL EOT92930.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP009332 Genomic DNA. Translation: BAK59046.1.
AHYM01000002 Genomic DNA. Translation: EOT32891.1.
ASWT01000006 Genomic DNA. Translation: EOT92930.1.
RefSeqYP_004779710.1. NC_015930.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAK59046; BAK59046; LCGT_1533.
GeneID11137631.
KEGGlgr:LCGT_1533.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00857.

Enzyme and pathway databases

BioCycLGAR420889:GH14-1556-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00124. Thymidine_kinase.
InterProIPR027417. P-loop_NTPase.
IPR001267. Thymidine_kinase.
IPR020633. Thymidine_kinase_CS.
IPR020634. Thymidine_kinase_subgr.
[Graphical view]
PANTHERPTHR11441. PTHR11441. 1 hit.
PfamPF00265. TK. 1 hit.
[Graphical view]
PIRSFPIRSF035805. TK_cell. 1 hit.
SUPFAMSSF52540. SSF52540. 1 hit.
PROSITEPS00603. TK_CELLULAR_TYPE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF9VAA5_LACGT
AccessionPrimary (citable) accession number: F9VAA5
Entry history
Integrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: April 16, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)