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F8W4B7 (F8W4B7_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1081 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSDARP00000124246

Sequences

Sequence LengthMass (Da)Tools
F8W4B7 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 8807F58CDD0AEFB0

FASTA1,081118,375
        10         20         30         40         50         60 
MDAVPDTKGS SGPPRGTPET KNNKKNLQEA RRKGRMDRSK AEEEMSNELQ NLDVQGKSKA 

        70         80         90        100        110        120 
TGTGLVYVDA FTRFHCLWDA SHPECPARVS TVMEMLETEG LLGRCVQVEA RAVTEDELLL 

       130        140        150        160        170        180 
VHTKEYVELM KSTQNMTEEE LKTLAEKYDS VYLHPGFFSS ACLSVGSVLQ LVDKVMTSQL 

       190        200        210        220        230        240 
RNGFSINRPP GHHAQADKMN GFCMFNNLAI AARYAQKRHR VQRVLIVDWD VHHGQGIQYI 

       250        260        270        280        290        300 
FEEDPSVLYF SVHRYEDGSF WPHLKESDSS SVGSGAGQGY NINLPWNKVG MESGDYITAF 

       310        320        330        340        350        360 
QQLLLPVAYE FQPQLVLVAA GFDAVIGDPK GGMQVSPECF SILTHMLKGV AQGRLVLALE 

       370        380        390        400        410        420 
GGYNLQSTAE GVCASMRSLL GDPCPHLPSS GAPCESALKS ISKTISDLYP FWKSLQTFEG 

       430        440        450        460        470        480 
GPLSEVSPLP APVCAEVKVS SPITGLVYDQ RMMLHHNMWD SHHPELPQRI SRIFSRHEEL 

       490        500        510        520        530        540 
RLLSRCHRIP ARLATEEELA LCHSSKHISI IKSSEHMKPR DLNRLGDEYN SIFISNESYT 

       550        560        570        580        590        600 
CALLAAGSCF NSAQAILTGQ VRNAVAIVRP PGHHAEKDTA CGFCFFNTAA LTARYAQSIT 

       610        620        630        640        650        660 
RESLRVLIVD WDVHHGNGTQ HIFEEDDSVL YISLHRYEDG AFFPNSEDAN YDKVGLGKGR 

       670        680        690        700        710        720 
GYNVNIPWNG GKMGDPEYMA AFHHLVMPIA REFAPELVLV SAGFDAARGD PLGGFQVTPE 

       730        740        750        760        770        780 
GYAHLTHQLM SLAAGRVLII LEGGYNLTSI SESMSMCTSM LLGDSPPSLD HLTPLKTSAT 

       790        800        810        820        830        840 
VSINNVLRAH APFWSSLRVN IPESLRLSLP SPKPKGKCTP GGKGKKSPRQ STPSQSPGQA 

       850        860        870        880        890        900 
THRPDQSGFD ELTADLLSLN LNTSTSSNTS PESVAVGGAR RKVKPNTHRV SAGLESESPL 

       910        920        930        940        950        960 
KLNPEKAGAG DDTDVKAETP NRSISEPVVT CDSSAVKDQE SLVLEAAGGN TVQSVLERVF 

       970        980        990       1000       1010       1020 
GAQATDVDTM YVVDPLPWCP HLESVRPVPA GGIDVFQPCE ECGGEAENWI CLFCYKVLCG 

      1030       1040       1050       1060       1070       1080 
RYVNQHMVTH GQESGHPVVL SFADLSVWCY ACESYVHNKV LHEAKNAAHL VKFGEGIHPF 


N 

« Hide

References

« Hide 'large scale' references
[1]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000124246.
[2]"The zebrafish reference genome sequence and its relationship to the human genome."
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J. expand/collapse author list , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000124246.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BX469901 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortalF8W4B7.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEF8W4B7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000148993; ENSDARP00000124246; ENSDARG00000008384.

Organism-specific databases

ZFINZDB-GENE-030131-3232. hdac6.

Phylogenomic databases

GeneTreeENSGT00530000062809.
OMALQENWVC.
OrthoDBEOG7992PT.
TreeFamTF106173.

Gene expression databases

BgeeF8W4B7.

Family and domain databases

Gene3D3.30.40.10. 1 hit.
3.40.800.20. 2 hits.
InterProIPR000286. His_deacetylse.
IPR023801. His_deacetylse_dom.
IPR013083. Znf_RING/FYVE/PHD.
IPR001607. Znf_UBP.
[Graphical view]
PANTHERPTHR10625. PTHR10625. 1 hit.
PfamPF00850. Hist_deacetyl. 2 hits.
PF02148. zf-UBP. 1 hit.
[Graphical view]
PRINTSPR01270. HDASUPER.
PROSITEPS50271. ZF_UBP. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20885908.

Entry information

Entry nameF8W4B7_DANRE
AccessionPrimary (citable) accession number: F8W4B7
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 16, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)