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Protein
Submitted name:

Protein Xntrpc

Gene

Xntrpc

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein XntrpcImported
Gene namesi
Name:XntrpcImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 7

Organism-specific databases

MGIiMGI:5546370. Xntrpc.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei718 – 741HelicalSequence analysisAdd BLAST24
Transmembranei753 – 772HelicalSequence analysisAdd BLAST20
Transmembranei831 – 853HelicalSequence analysisAdd BLAST23
Transmembranei924 – 945HelicalSequence analysisAdd BLAST22
Transmembranei991 – 1012HelicalSequence analysisAdd BLAST22

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSMUSG00000070425.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000081903.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 150XRCC1_NInterPro annotationAdd BLAST150
Domaini557 – 619TRP_2InterPro annotationAdd BLAST63
Domaini762 – 1023Ion_transInterPro annotationAdd BLAST262

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili1132 – 1159Sequence analysisAdd BLAST28

Sequence similaritiesi

Belongs to the transient receptor (TC 1.A.4) family. [View classification]SAAS annotation

Keywords - Domaini

ANK repeatSAAS annotation, Coiled coilSequence analysis, RepeatSAAS annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3609. Eukaryota.
ENOG410XQ0Y. LUCA.
GeneTreeiENSGT00760000119180.
KOiK04965.
OMAiITRVRNS.
OrthoDBiEOG091G0KP0.
TreeFamiTF313147.

Family and domain databases

Gene3Di1.25.40.20. 1 hit.
2.60.120.260. 1 hit.
InterProiIPR020683. Ankyrin_rpt-contain_dom.
IPR008979. Galactose-bd-like.
IPR005821. Ion_trans_dom.
IPR013555. TRP_dom.
IPR005458. TRPC2_channel.
IPR002153. TRPC_channel.
IPR002706. Xrcc1_N.
[Graphical view]
PANTHERiPTHR10117. PTHR10117. 1 hit.
PTHR10117:SF6. PTHR10117:SF6. 1 hit.
PfamiPF00520. Ion_trans. 1 hit.
PF08344. TRP_2. 1 hit.
PF01834. XRCC1_N. 1 hit.
[Graphical view]
PRINTSiPR01097. TRNSRECEPTRP.
PR01643. TRPCHANNEL2.
SUPFAMiSSF48403. SSF48403. 1 hit.
SSF49785. SSF49785. 1 hit.

Sequencei

Sequence statusi: Complete.

F8VQM8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPVKISHVV SFSSQDPKYP VENLLNPDSH RGPWLSCPQD KTGQLKVEFQ
60 70 80 90 100
LERAVPISYI DVGNCGCAFL QIDVGRSSWP LDRPFVTLLP ATMLMSRTDS
110 120 130 140 150
KSGKNRSGVR MFKDGDFLTP ASGESWDRLR LTCSQPFTRH QSFGLAFLRV
160 170 180 190 200
RSSLGSLADP VVDPSAPGSS GLNQNSTDVL ESDPRPWLTN PSIRRTFFPD
210 220 230 240 250
PQTSTKEISE LKGMLKQLQP GPLGRAARMV LSAARKAPPA SVVSPNNSHG
260 270 280 290 300
EPGPSRAESA EPRAEEPNRK TAVGRRKRRK VQEPRRSLSN SSSQPNRRTG
310 320 330 340 350
RTRQRQHRPQ TKSDDGGVQA AGQCPICAGF FSIETLPQHA ATCGESPPPQ
360 370 380 390 400
PASPASLSSS ESVLRRHHVA LTPVPLVPKP QPNWTEIVNK KLKFPPTLLR
410 420 430 440 450
AIQEGQLGLV QQLLESSSDA SGAGPGGPLR NVEESEDRSW REALNLAIRL
460 470 480 490 500
GHEVITDVLL ANVKFDFRQI HEALLVAVDT NQPAVVRRLL ARLEREKGRK
510 520 530 540 550
VDTKSFSLAF FDSSIDGSRF APGVTPLTLA CQKDLYEIAQ LLMDQGHTIA
560 570 580 590 600
RPHPVSCACL ECSNARRYDL LKFSLSRINT YRGIASRAHL SLASEDAMLA
610 620 630 640 650
AFQLSRELRR LARKEPEFKP QYIALESLCQ DYGFELLGMC RNQSEVTAVL
660 670 680 690 700
NDLGEDSETE PEAEGLGQAF EEGIPNLARL RLAVNYNQKQ FVAHPICQQV
710 720 730 740 750
LSSIWCGNLA GWRGSTTIWK LFVAFLIFLT MPFLCIGYWL APKSQLGRLL
760 770 780 790 800
KIPVLKFLLH SASYLWFLIF LLGESLVMET QLSTFKGRSQ SVWETSLHMI
810 820 830 840 850
WVTGFLWFEC KEVWIEGLRS YLLDWWNFLD VVILSLYLAS FALRLLLAGL
860 870 880 890 900
AYMHCRDASD STTCRYFTTA ERSEWRTEDP QFLAEVLFAV TSMLSFTRLA
910 920 930 940 950
YILPAHESLG TLQISIGKMI DDMIRFMFIL MIILTAFLCG LNNIYVPYQE
960 970 980 990 1000
SEKLGNFNET FQFLFWTMFG MEEHTVVDMP QFLVPEFVGR AMYGIFTIVM
1010 1020 1030 1040 1050
VIVLLNMLIA MITNSFQKIE DDADVEWKFA RSKLYLSYFR EGLTLPVPFN
1060 1070 1080 1090 1100
ILPSPKAAFY LVRRIFRFLC CGSSCCKAKK SDYPPIGTFT NPGARAGSAG
1110 1120 1130 1140 1150
EGERVSYRLR VIKALVQRYI ETARREFEET RRKDLGNRLT ELTKTVSRLQ
1160 1170 1180 1190 1200
SEVASVQKNL AAGGAPRPPD GASILSRYIT RVRNSFQNLG PPTSDTPAEL
1210 1220 1230 1240 1250
TMPGIVETEV SLGDGLDGTG EAGAPAPGEP GSSSSAHVLV HREQEAEGSG
1260
DLLLEGDLET KGES
Length:1,264
Mass (Da):140,722
Last modified:September 21, 2011 - v1
Checksum:i7980E6ED0FD79F73
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC132297 Genomic DNA. No translation available.
AC150275 Genomic DNA. No translation available.
RefSeqiNP_035774.2. NM_011644.3.
UniGeneiMm.292904.

Genome annotation databases

EnsembliENSMUST00000084843; ENSMUSP00000081903; ENSMUSG00000070425.
ENSMUST00000094129; ENSMUSP00000091679; ENSMUSG00000070425.
GeneIDi102443351.
KEGGimmu:102443351.
UCSCiuc033jau.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC132297 Genomic DNA. No translation available.
AC150275 Genomic DNA. No translation available.
RefSeqiNP_035774.2. NM_011644.3.
UniGeneiMm.292904.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000081903.

Protocols and materials databases

DNASUi22064.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000084843; ENSMUSP00000081903; ENSMUSG00000070425.
ENSMUST00000094129; ENSMUSP00000091679; ENSMUSG00000070425.
GeneIDi102443351.
KEGGimmu:102443351.
UCSCiuc033jau.1. mouse.

Organism-specific databases

CTDi102443351.
MGIiMGI:5546370. Xntrpc.

Phylogenomic databases

eggNOGiKOG3609. Eukaryota.
ENOG410XQ0Y. LUCA.
GeneTreeiENSGT00760000119180.
KOiK04965.
OMAiITRVRNS.
OrthoDBiEOG091G0KP0.
TreeFamiTF313147.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000070425.

Family and domain databases

Gene3Di1.25.40.20. 1 hit.
2.60.120.260. 1 hit.
InterProiIPR020683. Ankyrin_rpt-contain_dom.
IPR008979. Galactose-bd-like.
IPR005821. Ion_trans_dom.
IPR013555. TRP_dom.
IPR005458. TRPC2_channel.
IPR002153. TRPC_channel.
IPR002706. Xrcc1_N.
[Graphical view]
PANTHERiPTHR10117. PTHR10117. 1 hit.
PTHR10117:SF6. PTHR10117:SF6. 1 hit.
PfamiPF00520. Ion_trans. 1 hit.
PF08344. TRP_2. 1 hit.
PF01834. XRCC1_N. 1 hit.
[Graphical view]
PRINTSiPR01097. TRNSRECEPTRP.
PR01643. TRPCHANNEL2.
SUPFAMiSSF48403. SSF48403. 1 hit.
SSF49785. SSF49785. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiF8VQM8_MOUSE
AccessioniPrimary (citable) accession number: F8VQM8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: November 2, 2016
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.