F8VDM9 (F8VDM9_SALBC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uracil-DNA glycosylase EMBL CCC31424.1
EC=3.2.2.- EMBL CCC31424.1

Gene names

Name:	ung EMBL CCC31424.1
Ordered Locus Names:	SBG_2365 EMBL CCC31424.1

Organism

Salmonella bongori (strain ATCC 43975 / DSM 13772 / NCTC 12419) [Complete proteome] [HAMAP] EMBL CCC31424.1

Taxonomic identifier

218493 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Salmonella › Salmonella bongori

Protein attributes

Sequence length	229 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine By similarity. RuleBase RU003780
Catalytic activity	Hydrolyzes single-stranded DNA or mismatched double-stranded DNA and polynucleotides, releasing free uracil. RuleBase RU003780 SAAS SAAS002043
Sequence similarities	Belongs to the uracil-DNA glycosylase family. RuleBase RU003780

Ontologies

Keywords
Biological process	DNA damage DNA repair RuleBase RU003780 SAAS SAAS002043
Molecular function	Glycosidase RuleBase RU003780 SAAS SAAS002043 EMBL CCC31424.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	base-excision repair Inferred from electronic annotation. Source: HAMAP
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	uracil DNA N-glycosylase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F8VDM9 [UniParc]. Last modified September 21, 2011. Version 1. Checksum: 360478F483E42FB0	FASTA	229	25,508
	10 20 30 40 50 60 MATELTWHDV LADEKQQPYF INTLHTVAGE RQSGITVYPP QKDVFNAFRF TELGDVKVVI 70 80 90 100 110 120 LGQDPYHGPG QAHGLAFSVR PGIAPPPSLV NMYKELEASI PGFVRPAHGY LESWARQGVL 130 140 150 160 170 180 LLNTVLTVRA GQAHSHASLG WETFTDKVIS LINQHREGVV FLLWGSHAQK KGAIIDPQRH 190 200 210 220 HILKAPHPSP LSAHRGFFGC NHFVLTNQWL EQHGEKTIDW TPVLPAESE

References

[1]

"Salmonella bongori provides insights into the evolution of the Salmonellae." Fookes M., Schroeder G.N., Langridge G.C., Blondel C.J., Mammina C., Connor T.R., Seth-Smith H., Vernikos G.S., Robinson K.S., Sanders M., Petty N.K., Kingsley R.A., Baumler A.J., Nuccio S.P., Contreras I., Santiviago C.A., Maskell D., Barrow P. , Humphrey T., Nastasi A., Roberts M., Frankel G., Parkhill J., Dougan G., Thomson N.R. PLoS Pathog. 7:E1002191-E1002191(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43975 / DSM 13772 / NCTC 12419.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FR877557 Genomic DNA. Translation: CCC31424.1.
RefSeq	YP_004731191.1. NC_015761.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	10970684.
KEGG	sbg:SBG_2365.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K03648.
Enzyme and pathway databases
BioCyc	SBON218493:GJAH-2375-MONOMER.
Family and domain databases
Gene3D	3.40.470.10. 1 hit.
HAMAP	MF_00148. UDG.
InterPro	IPR018085. Ura-DNA_Glyclase_AS. IPR002043. Ura_DNA_glycsylse. IPR005122. Uracil-DNA_glycosylase-like. [Graphical view]
PANTHER	PTHR11264. PTHR11264. 1 hit.
Pfam	PF03167. UDG. 1 hit. [Graphical view]
SMART	SM00986. UDG. 1 hit. [Graphical view]
SUPFAM	SSF52141. UDNA_glycsylseSF. 1 hit.
TIGRFAMs	TIGR00628. ung. 1 hit.
PROSITE	PS00130. U_DNA_GLYCOSYLASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F8VDM9_SALBC

Accession

Primary (citable) accession number: F8VDM9

Entry history

Integrated into UniProtKB/TrEMBL:	September 21, 2011
Last sequence update:	September 21, 2011
Last modified:	May 1, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)