F8JQI3 (F8JQI3_STREN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase LigD, ligase domain EMBL CCB78145.1
EC=6.5.1.1 EMBL CCB78145.1

Gene names

Name:	ligD EMBL CCB78145.1
Ordered Locus Names:	SCAT_5457 EMBL CCB78145.1

Organism

Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) [Complete proteome] [HAMAP]

Taxonomic identifier

1003195 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptomycineae › Streptomycetaceae › Streptomyces › Streptomyces cattleya

Protein attributes

Sequence length	313 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL CCB78145.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F8JQI3 [UniParc]. Last modified September 21, 2011. Version 1. Checksum: 035BB2AD648C5C62	FASTA	313	35,234
	10 20 30 40 50 60 MPDRVTPMLA VLSDRRHFDD TWVLERKLDG VRAIGFRDGD TVRLASRTGQ RLENTYPEIV 70 80 90 100 110 120 RALADQPQRA FVVDGEIVAL DDGRTSFERL QRRMQLTRPS AALASGVAVT YFLFDLLHLA 130 140 150 160 170 180 GHDTTGLPLR SRKELLREAV RYTGPLRYTE HHTATGDAGQ LLDAACAQGW EGLIAKRADG 190 200 210 220 230 240 RYQQRRSSDW LKLKCLTAQE FVVGGYTEPA GSRAGFGALL LGYHQGGRLR YAGKVGTGYD 250 260 270 280 290 300 TATLRRLRGL LDERGLTEPP FAEPVRERGA HWVRPDLVVQ VAFTEWTRDG RLRAPRYLGL 310 RQDKRPERVV REG

References

[1]

"Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites." Barbe V., Bouzon M., Mangenot S., Badet B., Poulain J., Segurens B., Vallenet D., Marliere P., Weissenbach J. J. Bacteriol. 193:5055-5056(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FQ859185 Genomic DNA. Translation: CCB78145.1.
RefSeq	YP_004914948.1. NC_016111.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CCB78145; CCB78145; SCAT_5457.
GeneID	11355980.
KEGG	sct:SCAT_5457.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	SCAT1003195:GJCM-5506-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F8JQI3_STREN

Accession

Primary (citable) accession number: F8JQI3

Entry history

Integrated into UniProtKB/TrEMBL:	September 21, 2011
Last sequence update:	September 21, 2011
Last modified:	April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)