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F8JQI3

- F8JQI3_STREN

UniProt

F8JQI3 - F8JQI3_STREN

Protein
Submitted name:

DNA polymerase LigD, ligase domain

Gene

ligD

Organism
Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (21 Sep 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSCAT1003195:GJCM-5506-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, ligase domainImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:SCAT_5457Imported
    OrganismiStreptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)Imported
    Taxonomic identifieri1003195 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces
    ProteomesiUP000006623: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F8JQI3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPDRVTPMLA VLSDRRHFDD TWVLERKLDG VRAIGFRDGD TVRLASRTGQ    50
    RLENTYPEIV RALADQPQRA FVVDGEIVAL DDGRTSFERL QRRMQLTRPS 100
    AALASGVAVT YFLFDLLHLA GHDTTGLPLR SRKELLREAV RYTGPLRYTE 150
    HHTATGDAGQ LLDAACAQGW EGLIAKRADG RYQQRRSSDW LKLKCLTAQE 200
    FVVGGYTEPA GSRAGFGALL LGYHQGGRLR YAGKVGTGYD TATLRRLRGL 250
    LDERGLTEPP FAEPVRERGA HWVRPDLVVQ VAFTEWTRDG RLRAPRYLGL 300
    RQDKRPERVV REG 313
    Length:313
    Mass (Da):35,234
    Last modified:September 21, 2011 - v1
    Checksum:i035BB2AD648C5C62
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FQ859185 Genomic DNA. Translation: CCB78145.1.
    RefSeqiYP_004914948.1. NC_016111.1.

    Genome annotation databases

    EnsemblBacteriaiCCB78145; CCB78145; SCAT_5457.
    GeneIDi11355980.
    KEGGisct:SCAT_5457.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FQ859185 Genomic DNA. Translation: CCB78145.1 .
    RefSeqi YP_004914948.1. NC_016111.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CCB78145 ; CCB78145 ; SCAT_5457 .
    GeneIDi 11355980.
    KEGGi sct:SCAT_5457.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci SCAT1003195:GJCM-5506-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites."
      Barbe V., Bouzon M., Mangenot S., Badet B., Poulain J., Segurens B., Vallenet D., Marliere P., Weissenbach J.
      J. Bacteriol. 193:5055-5056(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057Imported.

    Entry informationi

    Entry nameiF8JQI3_STREN
    AccessioniPrimary (citable) accession number: F8JQI3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 21, 2011
    Last sequence update: September 21, 2011
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3