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Protein
Submitted name:

LigD protein

Gene

ligD

Organism
Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSCAT1003195:GJCM-5506-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
LigD proteinImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
Ordered Locus Names:SCAT_5457Imported
OrganismiStreptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)Imported
Taxonomic identifieri1003195 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces
ProteomesiUP000006623 Componenti: Chromosome

Family & Domainsi

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8JQI3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPDRVTPMLA VLSDRRHFDD TWVLERKLDG VRAIGFRDGD TVRLASRTGQ
60 70 80 90 100
RLENTYPEIV RALADQPQRA FVVDGEIVAL DDGRTSFERL QRRMQLTRPS
110 120 130 140 150
AALASGVAVT YFLFDLLHLA GHDTTGLPLR SRKELLREAV RYTGPLRYTE
160 170 180 190 200
HHTATGDAGQ LLDAACAQGW EGLIAKRADG RYQQRRSSDW LKLKCLTAQE
210 220 230 240 250
FVVGGYTEPA GSRAGFGALL LGYHQGGRLR YAGKVGTGYD TATLRRLRGL
260 270 280 290 300
LDERGLTEPP FAEPVRERGA HWVRPDLVVQ VAFTEWTRDG RLRAPRYLGL
310
RQDKRPERVV REG
Length:313
Mass (Da):35,234
Last modified:September 21, 2011 - v1
Checksum:i035BB2AD648C5C62
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FQ859185 Genomic DNA. Translation: CCB78145.1.
RefSeqiWP_014146159.1. NC_016111.1.
YP_004914948.1. NC_016111.1.

Genome annotation databases

EnsemblBacteriaiCCB78145; CCB78145; SCAT_5457.
KEGGisct:SCAT_5457.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FQ859185 Genomic DNA. Translation: CCB78145.1.
RefSeqiWP_014146159.1. NC_016111.1.
YP_004914948.1. NC_016111.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCB78145; CCB78145; SCAT_5457.
KEGGisct:SCAT_5457.

Enzyme and pathway databases

BioCyciSCAT1003195:GJCM-5506-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites."
    Barbe V., Bouzon M., Mangenot S., Badet B., Poulain J., Segurens B., Vallenet D., Marliere P., Weissenbach J.
    J. Bacteriol. 193:5055-5056(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057Imported.

Entry informationi

Entry nameiF8JQI3_STREN
AccessioniPrimary (citable) accession number: F8JQI3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 29, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.