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F8JQI3

- F8JQI3_STREN

UniProt

F8JQI3 - F8JQI3_STREN

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Protein
Submitted name:

DNA polymerase LigD, ligase domain

Gene

ligD

Organism
Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSCAT1003195:GJCM-5506-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domainImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
Ordered Locus Names:SCAT_5457Imported
OrganismiStreptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)Imported
Taxonomic identifieri1003195 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces
ProteomesiUP000006623: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8JQI3-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MPDRVTPMLA VLSDRRHFDD TWVLERKLDG VRAIGFRDGD TVRLASRTGQ
60 70 80 90 100
RLENTYPEIV RALADQPQRA FVVDGEIVAL DDGRTSFERL QRRMQLTRPS
110 120 130 140 150
AALASGVAVT YFLFDLLHLA GHDTTGLPLR SRKELLREAV RYTGPLRYTE
160 170 180 190 200
HHTATGDAGQ LLDAACAQGW EGLIAKRADG RYQQRRSSDW LKLKCLTAQE
210 220 230 240 250
FVVGGYTEPA GSRAGFGALL LGYHQGGRLR YAGKVGTGYD TATLRRLRGL
260 270 280 290 300
LDERGLTEPP FAEPVRERGA HWVRPDLVVQ VAFTEWTRDG RLRAPRYLGL
310
RQDKRPERVV REG
Length:313
Mass (Da):35,234
Last modified:September 21, 2011 - v1
Checksum:i035BB2AD648C5C62
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FQ859185 Genomic DNA. Translation: CCB78145.1.
RefSeqiWP_014146159.1. NC_016111.1.
YP_004914948.1. NC_016111.1.

Genome annotation databases

EnsemblBacteriaiCCB78145; CCB78145; SCAT_5457.
GeneIDi11355980.
KEGGisct:SCAT_5457.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FQ859185 Genomic DNA. Translation: CCB78145.1 .
RefSeqi WP_014146159.1. NC_016111.1.
YP_004914948.1. NC_016111.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CCB78145 ; CCB78145 ; SCAT_5457 .
GeneIDi 11355980.
KEGGi sct:SCAT_5457.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci SCAT1003195:GJCM-5506-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites."
    Barbe V., Bouzon M., Mangenot S., Badet B., Poulain J., Segurens B., Vallenet D., Marliere P., Weissenbach J.
    J. Bacteriol. 193:5055-5056(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057Imported.

Entry informationi

Entry nameiF8JQI3_STREN
AccessioniPrimary (citable) accession number: F8JQI3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: October 29, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3