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F8JIN6 (F8JIN6_HYPSM) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Exodeoxyribonuclease 7 large subunit HAMAP-Rule MF_00378

EC=3.1.11.6 HAMAP-Rule MF_00378
Alternative name(s):
Exodeoxyribonuclease VII large subunit HAMAP-Rule MF_00378
Gene names
Name:xseA HAMAP-Rule MF_00378 EMBL CCB67039.1
Ordered Locus Names:HYPMC_3829 EMBL CCB67039.1
OrganismHyphomicrobium sp. (strain MC1) [Complete proteome] [HAMAP] EMBL CCB67039.1
Taxonomic identifier717785 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium

Protein attributes

Sequence length536 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides By similarity. HAMAP-Rule MF_00378 SAAS SAAS025824

Catalytic activity

Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates. HAMAP-Rule MF_00378

Exonucleolytic cleavage in either 5'- to 3'-or 3'- to 5'-direction to yield nucleoside 5'-phosphates. SAAS SAAS025824

Subunit structure

Heterooligomer composed of large and small subunits By similarity. HAMAP-Rule MF_00378 SAAS SAAS025824

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00378 SAAS SAAS025824.

Sequence similarities

Belongs to the XseA family. HAMAP-Rule MF_00378

Sequences

Sequence LengthMass (Da)Tools
F8JIN6 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 698D4A69845AA249

FASTA53657,739
        10         20         30         40         50         60 
MLAAAGAEKK DIHQVACCNP VVSVASPCSI GGETSKTAKE NGKLLNSIPN TRESRSGANA 

        70         80         90        100        110        120 
PEFSVSELSG AIKRALEEGF GYVRLRGEIS GYRGPHASGH CYFALKDDKA KIEAVVWKGT 

       130        140        150        160        170        180 
FGRLRFKPEE GMEVVAQGKI TTFPGSSKYQ IVIEALEPAG AGALMALLEE RKRKFAAEGL 

       190        200        210        220        230        240 
FDEDRKRPRP FLPKIVGIVT SPTGAVIRDM LHGFNERFPT RVLLWPVRVQ GEGSAAEVAA 

       250        260        270        280        290        300 
AIRGFNALEA DGTIPRPDVL IVARGGGSLE DLWSFNEEIV VRAVAESTIS LISAVGHETD 

       310        320        330        340        350        360 
WTLIDLVADA RAPTPTKAAE WAVPKYSELI ENVEKLMLRK RTAVRRAIES ARTHLKASAR 

       370        380        390        400        410        420 
GLPKLQDLVA LPRQRFDAAD RRLSRALLAN TRAHATRLAR VSGRLSPAPI VQKHSRCAER 

       430        440        450        460        470        480 
LDGLERRAGR ALLNRVAVSR RVLEGRAALL KSLGYQSVLS RGFALVRNEA GHMVRQAASL 

       490        500        510        520        530 
VAGDVLNIEF SDGRVGATVN GSDVSSATPD VSNPTSSKVK TPRQKSSGRG GQGSLF 

« Hide

References

[1]"The complete genome of Hyphomicrobium sp. MC1."
Genoscope.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MC1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FQ859181 Genomic DNA. Translation: CCB67039.1.
RefSeqYP_004677605.1. NC_015717.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCB67039; CCB67039; HYPMC_3829.
GeneID10892318.
KEGGhmc:HYPMC_3829.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK03601.

Enzyme and pathway databases

BioCycHSP717785:GJ7O-3837-MONOMER.

Family and domain databases

HAMAPMF_00378. Exonuc_7_L.
InterProIPR003753. Exonuc_VII_L.
IPR020579. Exonuc_VII_lsu_C.
IPR025824. OB-fold_nuc-bd_dom.
[Graphical view]
PfamPF02601. Exonuc_VII_L. 1 hit.
PF13742. tRNA_anti_2. 1 hit.
[Graphical view]
TIGRFAMsTIGR00237. xseA. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF8JIN6_HYPSM
AccessionPrimary (citable) accession number: F8JIN6
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 16, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)