Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

F8JIN6

- F8JIN6_HYPSM

UniProt

F8JIN6 - F8JIN6_HYPSM

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Exodeoxyribonuclease 7 large subunit

Gene

xseA

Organism
Hyphomicrobium sp. (strain MC1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.UniRule annotationSAAS annotation

Catalytic activityi

Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. exodeoxyribonuclease VII activity Source: UniProtKB-HAMAP
  2. nucleic acid binding Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

ExonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease

Enzyme and pathway databases

BioCyciHSP717785:GJ7O-3837-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Exodeoxyribonuclease 7 large subunitUniRule annotationSAAS annotation (EC:3.1.11.6UniRule annotationSAAS annotation)
Alternative name(s):
Exodeoxyribonuclease VII large subunitUniRule annotation
Gene namesi
Name:xseAUniRule annotationImported
Ordered Locus Names:HYPMC_3829Imported
OrganismiHyphomicrobium sp. (strain MC1)Imported
Taxonomic identifieri717785 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium
ProteomesiUP000000494: Chromosome

Subcellular locationi

Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
  2. exodeoxyribonuclease VII complex Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Heterooligomer composed of large and small subunits.UniRule annotationSAAS annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the XseA family.UniRule annotation

Phylogenomic databases

KOiK03601.

Family and domain databases

HAMAPiMF_00378. Exonuc_7_L.
InterProiIPR003753. Exonuc_VII_L.
IPR020579. Exonuc_VII_lsu_C.
IPR025824. OB-fold_nuc-bd_dom.
[Graphical view]
PfamiPF02601. Exonuc_VII_L. 1 hit.
PF13742. tRNA_anti_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00237. xseA. 1 hit.

Sequencei

Sequence statusi: Complete.

F8JIN6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLAAAGAEKK DIHQVACCNP VVSVASPCSI GGETSKTAKE NGKLLNSIPN
60 70 80 90 100
TRESRSGANA PEFSVSELSG AIKRALEEGF GYVRLRGEIS GYRGPHASGH
110 120 130 140 150
CYFALKDDKA KIEAVVWKGT FGRLRFKPEE GMEVVAQGKI TTFPGSSKYQ
160 170 180 190 200
IVIEALEPAG AGALMALLEE RKRKFAAEGL FDEDRKRPRP FLPKIVGIVT
210 220 230 240 250
SPTGAVIRDM LHGFNERFPT RVLLWPVRVQ GEGSAAEVAA AIRGFNALEA
260 270 280 290 300
DGTIPRPDVL IVARGGGSLE DLWSFNEEIV VRAVAESTIS LISAVGHETD
310 320 330 340 350
WTLIDLVADA RAPTPTKAAE WAVPKYSELI ENVEKLMLRK RTAVRRAIES
360 370 380 390 400
ARTHLKASAR GLPKLQDLVA LPRQRFDAAD RRLSRALLAN TRAHATRLAR
410 420 430 440 450
VSGRLSPAPI VQKHSRCAER LDGLERRAGR ALLNRVAVSR RVLEGRAALL
460 470 480 490 500
KSLGYQSVLS RGFALVRNEA GHMVRQAASL VAGDVLNIEF SDGRVGATVN
510 520 530
GSDVSSATPD VSNPTSSKVK TPRQKSSGRG GQGSLF
Length:536
Mass (Da):57,739
Last modified:September 21, 2011 - v1
Checksum:i698D4A69845AA249
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FQ859181 Genomic DNA. Translation: CCB67039.1.
RefSeqiWP_013949432.1. NC_015717.1.
YP_004677605.1. NC_015717.1.

Genome annotation databases

EnsemblBacteriaiCCB67039; CCB67039; HYPMC_3829.
GeneIDi10892318.
KEGGihmc:HYPMC_3829.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FQ859181 Genomic DNA. Translation: CCB67039.1 .
RefSeqi WP_013949432.1. NC_015717.1.
YP_004677605.1. NC_015717.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CCB67039 ; CCB67039 ; HYPMC_3829 .
GeneIDi 10892318.
KEGGi hmc:HYPMC_3829.

Phylogenomic databases

KOi K03601.

Enzyme and pathway databases

BioCyci HSP717785:GJ7O-3837-MONOMER.

Family and domain databases

HAMAPi MF_00378. Exonuc_7_L.
InterProi IPR003753. Exonuc_VII_L.
IPR020579. Exonuc_VII_lsu_C.
IPR025824. OB-fold_nuc-bd_dom.
[Graphical view ]
Pfami PF02601. Exonuc_VII_L. 1 hit.
PF13742. tRNA_anti_2. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00237. xseA. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The complete genome of Hyphomicrobium sp. MC1."
    Genoscope.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MC1Imported.

Entry informationi

Entry nameiF8JIN6_HYPSM
AccessioniPrimary (citable) accession number: F8JIN6
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: October 29, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3