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F8JHK1

- F8JHK1_HYPSM

UniProt

F8JHK1 - F8JHK1_HYPSM

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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

HYPMC_2434

Organism
Hyphomicrobium sp. (strain MC1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHSP717785:GJ7O-2435-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:HYPMC_2434Imported
OrganismiHyphomicrobium sp. (strain MC1)Imported
Taxonomic identifieri717785 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium
ProteomesiUP000000494: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF8JHK1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8JHK1-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MRKAAPVKRP RSVPLKASAL KSGRGLVSPS KIEGAVKSAM PSFVEPCLAT
60 70 80 90 100
LVAKPPIGEE WVHEIKFDGY RIQARIDRND VRLLTRNGLD WTDRFGGLAK
110 120 130 140 150
ALAEFHRGKA IIDGELVVED ANGHSSFSAL AAALKSGRSE KFVLHCFDLL
160 170 180 190 200
YLDGLNLIGA TLRDRKRLLE KLFVRRAKAG PIRYSGHLAV DGARMLSDAC
210 220 230 240 250
SLGLEGIISK RIDRPYRSGR HDDWLKSKCI QVDEFVIVGY LVSSAGPNAV
260 270 280 290 300
GALVVGYYDK KRLIYAGRVG TGYTHRTAAD LMRRLRPLHV DAPPVQGPLT
310 320 330 340 350
NLQRRDVVWV RPDLVAQIEY RAWTGDGLLR HAAFKGLRED KPAKDVRRPI

TKVIET
Length:356
Mass (Da):39,471
Last modified:September 21, 2011 - v1
Checksum:i4B6FD178BF76D939
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FQ859181 Genomic DNA. Translation: CCB65651.1.
RefSeqiYP_004676219.1. NC_015717.1.

Genome annotation databases

EnsemblBacteriaiCCB65651; CCB65651; HYPMC_2434.
GeneIDi10891242.
KEGGihmc:HYPMC_2434.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FQ859181 Genomic DNA. Translation: CCB65651.1 .
RefSeqi YP_004676219.1. NC_015717.1.

3D structure databases

ProteinModelPortali F8JHK1.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CCB65651 ; CCB65651 ; HYPMC_2434 .
GeneIDi 10891242.
KEGGi hmc:HYPMC_2434.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci HSP717785:GJ7O-2435-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete genome of Hyphomicrobium sp. MC1."
    Genoscope.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MC1Imported.

Entry informationi

Entry nameiF8JHK1_HYPSM
AccessioniPrimary (citable) accession number: F8JHK1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: October 1, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3