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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

HYPMC_2434

Organism
Hyphomicrobium sp. (strain MC1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHSP717785:GJ7O-2435-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:HYPMC_2434Imported
OrganismiHyphomicrobium sp. (strain MC1)Imported
Taxonomic identifieri717785 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium
ProteomesiUP000000494: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF8JHK1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8JHK1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRKAAPVKRP RSVPLKASAL KSGRGLVSPS KIEGAVKSAM PSFVEPCLAT
60 70 80 90 100
LVAKPPIGEE WVHEIKFDGY RIQARIDRND VRLLTRNGLD WTDRFGGLAK
110 120 130 140 150
ALAEFHRGKA IIDGELVVED ANGHSSFSAL AAALKSGRSE KFVLHCFDLL
160 170 180 190 200
YLDGLNLIGA TLRDRKRLLE KLFVRRAKAG PIRYSGHLAV DGARMLSDAC
210 220 230 240 250
SLGLEGIISK RIDRPYRSGR HDDWLKSKCI QVDEFVIVGY LVSSAGPNAV
260 270 280 290 300
GALVVGYYDK KRLIYAGRVG TGYTHRTAAD LMRRLRPLHV DAPPVQGPLT
310 320 330 340 350
NLQRRDVVWV RPDLVAQIEY RAWTGDGLLR HAAFKGLRED KPAKDVRRPI

TKVIET
Length:356
Mass (Da):39,471
Last modified:September 21, 2011 - v1
Checksum:i4B6FD178BF76D939
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FQ859181 Genomic DNA. Translation: CCB65651.1.
RefSeqiYP_004676219.1. NC_015717.1.

Genome annotation databases

EnsemblBacteriaiCCB65651; CCB65651; HYPMC_2434.
GeneIDi10891242.
KEGGihmc:HYPMC_2434.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FQ859181 Genomic DNA. Translation: CCB65651.1.
RefSeqiYP_004676219.1. NC_015717.1.

3D structure databases

ProteinModelPortaliF8JHK1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCB65651; CCB65651; HYPMC_2434.
GeneIDi10891242.
KEGGihmc:HYPMC_2434.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciHSP717785:GJ7O-2435-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The complete genome of Hyphomicrobium sp. MC1."
    Genoscope.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MC1Imported.

Entry informationi

Entry nameiF8JHK1_HYPSM
AccessioniPrimary (citable) accession number: F8JHK1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: January 7, 2015
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.