Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

F8JHK1 (F8JHK1_HYPSM) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:HYPMC_2434 EMBL CCB65651.1
OrganismHyphomicrobium sp. (strain MC1) [Complete proteome] [HAMAP] EMBL CCB65651.1
Taxonomic identifier717785 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium

Protein attributes

Sequence length356 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CCB65651.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F8JHK1 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 4B6FD178BF76D939

FASTA35639,471
        10         20         30         40         50         60 
MRKAAPVKRP RSVPLKASAL KSGRGLVSPS KIEGAVKSAM PSFVEPCLAT LVAKPPIGEE 

        70         80         90        100        110        120 
WVHEIKFDGY RIQARIDRND VRLLTRNGLD WTDRFGGLAK ALAEFHRGKA IIDGELVVED 

       130        140        150        160        170        180 
ANGHSSFSAL AAALKSGRSE KFVLHCFDLL YLDGLNLIGA TLRDRKRLLE KLFVRRAKAG 

       190        200        210        220        230        240 
PIRYSGHLAV DGARMLSDAC SLGLEGIISK RIDRPYRSGR HDDWLKSKCI QVDEFVIVGY 

       250        260        270        280        290        300 
LVSSAGPNAV GALVVGYYDK KRLIYAGRVG TGYTHRTAAD LMRRLRPLHV DAPPVQGPLT 

       310        320        330        340        350 
NLQRRDVVWV RPDLVAQIEY RAWTGDGLLR HAAFKGLRED KPAKDVRRPI TKVIET 

« Hide

References

[1]"The complete genome of Hyphomicrobium sp. MC1."
Genoscope.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MC1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FQ859181 Genomic DNA. Translation: CCB65651.1.
RefSeqYP_004676219.1. NC_015717.1.

3D structure databases

ProteinModelPortalF8JHK1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCB65651; CCB65651; HYPMC_2434.
GeneID10891242.
KEGGhmc:HYPMC_2434.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycHSP717785:GJ7O-2435-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF8JHK1_HYPSM
AccessionPrimary (citable) accession number: F8JHK1
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 16, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)