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Protein

Superoxide dismutase

Gene

sodA

Organism
Hyphomicrobium sp. (strain MC1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Enzyme and pathway databases

BioCyciHSP717785:GJ7O-1693-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodAImported
Ordered Locus Names:HYPMC_1686Imported
OrganismiHyphomicrobium sp. (strain MC1)Imported
Taxonomic identifieri717785 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesHyphomicrobiaceaeHyphomicrobium
ProteomesiUP000000494: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF8J9P1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04564.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
IPR006311. TAT_signal.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
PS51318. TAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8J9P1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTNLDRRSFL KAARAVSVVA AVSSSATVKA FAETTGAGWP YKLPPLPYAF
60 70 80 90 100
GALEPNIDAQ TMELHHDKHH AAYVKNLNAA LKDHSQLASL PLEELLVKLS
110 120 130 140 150
DVPEDIRMTV RNNGGGHANH SMFWEIMGPP GGAGPDGEVK AAIDRDFGGL
160 170 180 190 200
DKLQQQFNAA GGKVFGSGWV FVTVDKDGKL ALVAKPNQDT PLMDGGRVLL
210 220 230 240
GNDVWEHAYY LKYQNRRPEY LKAWWNVVNW KAVGDRYSAA KAGKLAI
Length:247
Mass (Da):26,951
Last modified:September 21, 2011 - v1
Checksum:i18098A78E19653EF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FQ859181 Genomic DNA. Translation: CCB64916.1.
RefSeqiYP_004675488.1. NC_015717.1.

Genome annotation databases

EnsemblBacteriaiCCB64916; CCB64916; HYPMC_1686.
GeneIDi10890638.
KEGGihmc:HYPMC_1686.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FQ859181 Genomic DNA. Translation: CCB64916.1.
RefSeqiYP_004675488.1. NC_015717.1.

3D structure databases

ProteinModelPortaliF8J9P1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCB64916; CCB64916; HYPMC_1686.
GeneIDi10890638.
KEGGihmc:HYPMC_1686.

Phylogenomic databases

KOiK04564.

Enzyme and pathway databases

BioCyciHSP717785:GJ7O-1693-MONOMER.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
IPR006311. TAT_signal.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
PS51318. TAT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The complete genome of Hyphomicrobium sp. MC1."
    Genoscope.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MC1Imported.

Entry informationi

Entry nameiF8J9P1_HYPSM
AccessioniPrimary (citable) accession number: F8J9P1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: January 7, 2015
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.