ID   F8IJW4_ALIAT            Unreviewed;       308 AA.
AC   F8IJW4;
DT   21-SEP-2011, integrated into UniProtKB/TrEMBL.
DT   21-SEP-2011, sequence version 1.
DT   27-MAR-2024, entry version 41.
DE   SubName: Full=DNA polymerase LigD, polymerase domain protein {ECO:0000313|EMBL:AEJ43476.1};
GN   Name=lig {ECO:0000313|EMBL:AEJ43476.1};
GN   OrderedLocusNames=TC41_1544 {ECO:0000313|EMBL:AEJ43476.1};
OS   Alicyclobacillus acidocaldarius (strain Tc-4-1) (Bacillus acidocaldarius).
OC   Bacteria; Bacillota; Bacilli; Bacillales; Alicyclobacillaceae;
OC   Alicyclobacillus.
OX   NCBI_TaxID=1048834 {ECO:0000313|EMBL:AEJ43476.1, ECO:0000313|Proteomes:UP000000292};
RN   [1] {ECO:0000313|EMBL:AEJ43476.1, ECO:0000313|Proteomes:UP000000292}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Tc-4-1 {ECO:0000313|EMBL:AEJ43476.1,
RC   ECO:0000313|Proteomes:UP000000292};
RX   PubMed=21914900; DOI=10.1128/JB.05709-11;
RA   Chen Y., He Y., Zhang B., Yang J., Li W., Dong Z., Hu S.;
RT   "Complete Genome Sequence of Alicyclobacillus acidocaldarius Strain Tc-
RT   4-1.";
RL   J. Bacteriol. 193:5602-5603(2011).
RN   [2] {ECO:0000313|Proteomes:UP000000292}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Tc-4-1 {ECO:0000313|Proteomes:UP000000292};
RA   Chen Y., He Y., Dong Z., Hu S.;
RT   "The complete genome sequence of Alicyclobacillus acidocaldarius sp. Tc-4-
RT   1.";
RL   Submitted (JUN-2011) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CP002902; AEJ43476.1; -; Genomic_DNA.
DR   AlphaFoldDB; F8IJW4; -.
DR   STRING; 1048834.TC41_1544; -.
DR   KEGG; aad:TC41_1544; -.
DR   PATRIC; fig|1048834.4.peg.1467; -.
DR   eggNOG; COG3285; Bacteria.
DR   HOGENOM; CLU_008325_1_1_9; -.
DR   Proteomes; UP000000292; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR   GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR   CDD; cd04861; LigD_Pol_like; 1.
DR   Gene3D; 3.90.920.10; DNA primase, PRIM domain; 1.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   NCBIfam; TIGR02778; ligD_pol; 1.
DR   PANTHER; PTHR42705; BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD; 1.
DR   PANTHER; PTHR42705:SF2; MULTIFUNCTIONAL NON-HOMOLOGOUS END JOINING DNA REPAIR PROTEIN LIGD; 1.
DR   Pfam; PF21686; LigD_Prim-Pol; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   Ligase {ECO:0000256|ARBA:ARBA00022598};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741}.
FT   DOMAIN          28..277
FT                   /note="DNA ligase D polymerase"
FT                   /evidence="ECO:0000259|Pfam:PF21686"
SQ   SEQUENCE   308 AA;  34433 MW;  69637EF0E1DB085C CRC64;
     MKRMKRRETP PTLTHGDKIY FPGAGLNKRD YMTYLAQIGA HLVRHLRYRP VTLVRCPDGV
     TGRRFYQRHL PPHAPPSLPR KEVQGERPLI AIPDVETLLY YGNLGAIEFH AGLHQSDGPQ
     AGCPTALTFD LDPSDPNDFE RVRELALRLR EVLRELELDG LAKTTGASGL QVFVPLEQPL
     PYAVTRPVVN FIAAYCASRW PDLATTERRV HQRGSRVYVD APQHGPSRTL IAAYSVRAVE
     KALVSVPITW DELAGGVSPD EFDLNVVPDR LARMGDLLGI APRCPSSRVQ AIHDALPPPW
     RQTRVRSV
//