F8H3X5 (F8H3X5_PSEUT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL AEJ05924.1

Gene names

Ordered Locus Names:

PSTAB_2643

Organism

Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221) [Complete proteome] [HAMAP] EMBL AEJ05924.1

Taxonomic identifier

96563 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas stutzeri group › Pseudomonas stutzeri subgroup › Pseudomonas stutzeri

Protein attributes

Sequence length	568 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEJ05924.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F8H3X5 [UniParc]. Last modified September 21, 2011. Version 1. Checksum: D594D81A32204E4E	FASTA	568	63,751
	10 20 30 40 50 60 MKAFATLYSR LDATTSSNAK LAAMRDYFRE ADPADAAWAV YFLAGGRPRQ LVPTRVLRET 70 80 90 100 110 120 AMQAAGLPEW LFEESYQAVG DMAETISLLM PEAEHSSEDG LAVWMQDRLL PLRGLPPEEL 130 140 150 160 170 180 AERLPALWAQ LDRLSLMVCI KLITGAFRVG VSKLLVTRAL ASLADLDPKR VAQRLVGYTD 190 200 210 220 230 240 LSHRPSAEGY RALIAEESEH EHAQRGGQPY PFFLAHALQA PVDTFDTLLG APDNWFIEWK 250 260 270 280 290 300 WDGIRAQLVK RDGQIWVWSR GEELVSERFP ELCELARCLP DGTVIDGEIL VWKHAPETLA 310 320 330 340 350 360 GELFDDASTG EPSADGFGVQ PFALLQQRIG RKNLTAKVLQ DAPVAVLAYD LLEWQGDDWR 370 380 390 400 410 420 QREHRERRQQ LEAVVGQCPS PQLMLSPLVS GADWQDLARQ REASRQLGVE GMMIKARAAQ 430 440 450 460 470 480 YGVGRTKDVG VWWKWKIDPY SVDAVLIYAQ RGHGRRASLY TDYTFAVWDG EPGDPERKLV 490 500 510 520 530 540 PFAKAYSGLT DEEMRKVDAI VRKTTVEKFG PVRSVTPTLV FELGFEGIAA SSRHKSGIAV 550 560 RFPRMLRWRL DKPVDEADTL ETLKELLG

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete Genome Sequence of Pseudomonas stutzeri Strain CGMCC 1.1803." Yan Y., Chen M., Lu W., Zhang W., Ping S., Lin M. Submitted (JUN-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 17588.
[2]	"Complete genome sequence of Pseudomonas stutzeri strain CGMCC 1.1803." Yan Y., Chen M., Lu W., Zhang W., Ping S., Lin M. Submitted (JUN-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002881 Genomic DNA. Translation: AEJ05924.1.
RefSeq	YP_004715013.1. NC_015740.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEJ05924; AEJ05924; PSTAB_2643.
GeneID	10943686.
KEGG	psz:PSTAB_2643.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	PSTU96563:GHIN-2643-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F8H3X5_PSEUT

Accession

Primary (citable) accession number: F8H3X5

Entry history

Integrated into UniProtKB/TrEMBL:	September 21, 2011
Last sequence update:	September 21, 2011
Last modified:	April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)