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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

PSTAB_2643

Organism
Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSTU96563:GHIN-2702-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:PSTAB_2643Imported
OrganismiPseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221)Imported
Taxonomic identifieri96563 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000008932 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8H3X5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAFATLYSR LDATTSSNAK LAAMRDYFRE ADPADAAWAV YFLAGGRPRQ
60 70 80 90 100
LVPTRVLRET AMQAAGLPEW LFEESYQAVG DMAETISLLM PEAEHSSEDG
110 120 130 140 150
LAVWMQDRLL PLRGLPPEEL AERLPALWAQ LDRLSLMVCI KLITGAFRVG
160 170 180 190 200
VSKLLVTRAL ASLADLDPKR VAQRLVGYTD LSHRPSAEGY RALIAEESEH
210 220 230 240 250
EHAQRGGQPY PFFLAHALQA PVDTFDTLLG APDNWFIEWK WDGIRAQLVK
260 270 280 290 300
RDGQIWVWSR GEELVSERFP ELCELARCLP DGTVIDGEIL VWKHAPETLA
310 320 330 340 350
GELFDDASTG EPSADGFGVQ PFALLQQRIG RKNLTAKVLQ DAPVAVLAYD
360 370 380 390 400
LLEWQGDDWR QREHRERRQQ LEAVVGQCPS PQLMLSPLVS GADWQDLARQ
410 420 430 440 450
REASRQLGVE GMMIKARAAQ YGVGRTKDVG VWWKWKIDPY SVDAVLIYAQ
460 470 480 490 500
RGHGRRASLY TDYTFAVWDG EPGDPERKLV PFAKAYSGLT DEEMRKVDAI
510 520 530 540 550
VRKTTVEKFG PVRSVTPTLV FELGFEGIAA SSRHKSGIAV RFPRMLRWRL
560
DKPVDEADTL ETLKELLG
Length:568
Mass (Da):63,751
Last modified:September 21, 2011 - v1
Checksum:iD594D81A32204E4E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002881 Genomic DNA. Translation: AEJ05924.1.
RefSeqiWP_013983278.1. NC_015740.1.

Genome annotation databases

EnsemblBacteriaiAEJ05924; AEJ05924; PSTAB_2643.
KEGGipsz:PSTAB_2643.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002881 Genomic DNA. Translation: AEJ05924.1.
RefSeqiWP_013983278.1. NC_015740.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEJ05924; AEJ05924; PSTAB_2643.
KEGGipsz:PSTAB_2643.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciPSTU96563:GHIN-2702-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete Genome Sequence of Pseudomonas stutzeri Strain CGMCC 1.1803."
    Yan Y., Chen M., Lu W., Zhang W., Ping S., Lin M.
    Submitted (JUN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 17588.
  2. "Complete genome sequence of Pseudomonas stutzeri strain CGMCC 1.1803."
    Yan Y., Chen M., Lu W., Zhang W., Ping S., Lin M.
    Submitted (JUN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221Imported.

Entry informationi

Entry nameiF8H3X5_PSEUT
AccessioniPrimary (citable) accession number: F8H3X5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: July 22, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.