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Protein

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Pseudomonas stutzeri (Pseudomonas perfectomarina)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Cu cationUniRule annotationNote: Binds 1 copper ion per subunit.UniRule annotation
  • Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodCImported
Ordered Locus Names:PSTAB_2556Imported
ORF Names:AB691_1603Imported
OrganismiPseudomonas stutzeri (Pseudomonas perfectomarina)Imported
Taxonomic identifieri316 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000035652 Componenti: Chromosome
  • UP000008932 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_500337202120 – 173Superoxide dismutase [Cu-Zn]Sequence analysisAdd BLAST154

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini33 – 172Sod_CuInterPro annotationAdd BLAST140

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

KOiK04565.
OMAiGARYACG.
OrthoDBiPOG091H05JR.

Family and domain databases

CDDicd00305. Cu-Zn_Superoxide_Dismutase. 1 hit.
Gene3Di2.60.40.200. 1 hit.
InterProiIPR024134. SOD_Cu/Zn_/chaperone.
IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PANTHERiPTHR10003. PTHR10003. 1 hit.
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8H2Z9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKQWIIAALA GCTAVAVQAE TLNVKVNTVT AQGVGESVGS VKIESSDYGL
60 70 80 90 100
VFRPELSGLQ PGAHGFHVHA KGSCEPAEID GKQTPAGAAG GHWDPKNSGK
110 120 130 140 150
HGEPWGDGHM GDLPALYVDS EGKASQPVLA PRLKSLGDIK GLALMVHQGG
160 170
DNHSDHPQPL GGGGARVACG VIE
Length:173
Mass (Da):17,681
Last modified:September 21, 2011 - v1
Checksum:iAC8CB39B91F9F4AD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002881 Genomic DNA. Translation: AEJ05837.1.
CP011854 Genomic DNA. Translation: AKN26508.1.
RefSeqiWP_013983221.1. NZ_CP011854.1.

Genome annotation databases

EnsemblBacteriaiAEJ05837; AEJ05837; PSTAB_2556.
AKN26508; AKN26508; AB691_1603.
GeneIDi28547167.
KEGGipsz:PSTAB_2556.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002881 Genomic DNA. Translation: AEJ05837.1.
CP011854 Genomic DNA. Translation: AKN26508.1.
RefSeqiWP_013983221.1. NZ_CP011854.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEJ05837; AEJ05837; PSTAB_2556.
AKN26508; AKN26508; AB691_1603.
GeneIDi28547167.
KEGGipsz:PSTAB_2556.

Phylogenomic databases

KOiK04565.
OMAiGARYACG.
OrthoDBiPOG091H05JR.

Family and domain databases

CDDicd00305. Cu-Zn_Superoxide_Dismutase. 1 hit.
Gene3Di2.60.40.200. 1 hit.
InterProiIPR024134. SOD_Cu/Zn_/chaperone.
IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PANTHERiPTHR10003. PTHR10003. 1 hit.
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiF8H2Z9_PSEST
AccessioniPrimary (citable) accession number: F8H2Z9
Secondary accession number(s): A0A0H3YXI7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: November 30, 2016
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.