F8GDK8 (F8GDK8_NITSI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Pseudouridine synthase Rsu EMBL AEJ03214.1

Gene names

Ordered Locus Names:

Nit79A3_3493 EMBL AEJ03214.1

Organism

Nitrosomonas sp. (strain Is79A3) [Complete proteome] [HAMAP]

Taxonomic identifier

261292 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Nitrosomonadales › Nitrosomonadaceae › Nitrosomonas

Protein attributes

Sequence length	243 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 S4 RNA-binding domain. SAAS SAAS006145

Ontologies

Keywords
Ligand	RNA-binding SAAS SAAS006145
Molecular function	Isomerase SAAS SAAS006145
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F8GDK8 [UniParc]. Last modified September 21, 2011. Version 1. Checksum: 7FFC137F17C25558	FASTA	243	27,610
	10 20 30 40 50 60 MEKIRLSKLM SEQGLCSRRE ADRYIELGWV FVDGVQISEL GTKIYPTQKI KLNRAAQSQQ 70 80 90 100 110 120 TSLVTIILNK PIGYVSGQPE PGYRPAVVLI KPENQFIHPR STKRFQPVHL KNLAPAGRLD 130 140 150 160 170 180 IDSQGLLILT QDGRIAKQLI GAESEIEKEY LVRVEGALPK DKLALLNHGL SLDGKALKPA 190 200 210 220 230 240 QVSWQNQNQL RFILREGKKR QIRRMCELVN LKVTGLKRVR IGNIGLRDLP EGKWRYLQDG ENF

References

[1]

"Complete sequence of Nitrosomonas sp. Is79A3." US DOE Joint Genome Institute Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Lu M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Bollmann A. , Norton J., Suwa Y., Klotz M., Stein L., Laanbroek H., Arp D., Woyke T. Submitted (JUN-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Is79A3 EMBL AEJ03214.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002876 Genomic DNA. Translation: AEJ03214.1.
RefSeq	YP_004696613.1. NC_015731.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEJ03214; AEJ03214; Nit79A3_3493.
GeneID	10935601.
KEGG	nii:Nit79A3_3493.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K06182.
Enzyme and pathway databases
BioCyc	NSP261292:GH7H-3529-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR000748. PsdUridine_synth_RsuA/RluB/E/F. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00093. TIGR00093. 1 hit.
PROSITE	PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F8GDK8_NITSI

Accession

Primary (citable) accession number: F8GDK8

Entry history

Integrated into UniProtKB/TrEMBL:	September 21, 2011
Last sequence update:	September 21, 2011
Last modified:	April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)