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F8G5R9 (F8G5R9_PSEPU) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Isocitrate dehydrogenase [NADP] RuleBase RU004446

EC=1.1.1.42 RuleBase RU004446
Gene names
ORF Names:PPS_3421 EMBL AEJ13968.1
OrganismPseudomonas putida S16 [Complete proteome] EMBL AEJ13968.1
Taxonomic identifier1042876 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length418 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH. RuleBase RU004446

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. RuleBase RU004446

Sequence similarities

Belongs to the isocitrate and isopropylmalate dehydrogenases family.

Sequences

Sequence LengthMass (Da)Tools
F8G5R9 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: A0F3056014634DBC

FASTA41845,645
        10         20         30         40         50         60 
MGYQKIKVPT DGTKITVNAD HSLNVPDNPI IPYIEGDGIG VDVSPVMIKV VDAAVQKAYG 

        70         80         90        100        110        120 
GKRKIAWMEV YAGEKATQVY DQDTWLPQET LDAVRDYVVS IKGPLTTPVG GGIRSLNVAL 

       130        140        150        160        170        180 
RQQLDLYVCL RPVLWFQGVP SPVKKPGDVD MVIFRENSED IYAGIEWKAG SPEANKVIKF 

       190        200        210        220        230        240 
LKEEMGVTKI RFDQDCGIGV KPVSREGTKR LVRKALQYVV DNDRESLTLV HKGNIMKFTE 

       250        260        270        280        290        300 
GAFKDWGYEV ARDEFGAELL DGGPWMKFKN PKSGREVIVK DAIADAMLQQ ILLRPAEYDV 

       310        320        330        340        350        360 
IATLNLNGDY LSDALAAEVG GIGIAPGANL SDTVAMFEAT HGTAPKYAGQ DKVNPGSVIL 

       370        380        390        400        410 
SAEMMLRHMG WTEAADLIIK GTNGAIAAKT VTYDFERLMD GATLVSSSGF GDEMIKHM 

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References

[1]"Complete Genome Sequence of the Nicotine-Degrading Pseudomonas putida Strain S16."
Yu H., Tang H., Wang L., Yao Y., Wu G., Xu P.
J. Bacteriol. 193:5541-5542(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: S16 EMBL AEJ13968.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002870 Genomic DNA. Translation: AEJ13968.1.
RefSeqYP_004702848.1. NC_015733.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEJ13968; AEJ13968; PPS_3421.
GeneID10939051.
KEGGppt:PPS_3421.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00031.

Enzyme and pathway databases

BioCycPPUT1042876:GH0R-3379-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 1 hit.
InterProIPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR004439. Isocitrate_DH_NADP_dimer_prok.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERPTHR11835. PTHR11835. 1 hit.
PfamPF00180. Iso_dh. 1 hit.
[Graphical view]
TIGRFAMsTIGR00183. prok_nadp_idh. 1 hit.
PROSITEPS00470. IDH_IMDH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF8G5R9_PSEPU
AccessionPrimary (citable) accession number: F8G5R9
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)