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F8G5R9

- F8G5R9_PSEPU

UniProt

F8G5R9 - F8G5R9_PSEPU

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Protein
Isocitrate dehydrogenase [NADP]
Gene
PPS_3421
Organism
Pseudomonas putida S16
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH.UniRule annotation

Cofactori

Binds 1 magnesium or manganese ion per subunit By similarity.UniRule annotation

GO - Molecular functioni

  1. NAD binding Source: InterPro
  2. isocitrate dehydrogenase (NADP+) activity Source: UniProtKB-EC
  3. magnesium ion binding Source: InterPro

GO - Biological processi

  1. glyoxylate cycle Source: UniProtKB-KW
  2. tricarboxylic acid cycle Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Biological processi

Glyoxylate bypassUniRule annotation, Tricarboxylic acid cycleUniRule annotation

Keywords - Ligandi

ManganeseUniRule annotation, Metal-bindingUniRule annotation, NADPUniRule annotation

Enzyme and pathway databases

BioCyciPPUT1042876:GH0R-3379-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Isocitrate dehydrogenase [NADP]UniRule annotation (EC:1.1.1.42UniRule annotation)
Gene namesi
ORF Names:PPS_3421Imported
OrganismiPseudomonas putida S16Imported
Taxonomic identifieri1042876 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000502: Chromosome

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK00031.

Family and domain databases

Gene3Di3.40.718.10. 1 hit.
InterProiIPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR004439. Isocitrate_DH_NADP_dimer_prok.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERiPTHR11835. PTHR11835. 1 hit.
PfamiPF00180. Iso_dh. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00183. prok_nadp_idh. 1 hit.
PROSITEiPS00470. IDH_IMDH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8G5R9-1 [UniParc]FASTAAdd to Basket

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MGYQKIKVPT DGTKITVNAD HSLNVPDNPI IPYIEGDGIG VDVSPVMIKV    50
VDAAVQKAYG GKRKIAWMEV YAGEKATQVY DQDTWLPQET LDAVRDYVVS 100
IKGPLTTPVG GGIRSLNVAL RQQLDLYVCL RPVLWFQGVP SPVKKPGDVD 150
MVIFRENSED IYAGIEWKAG SPEANKVIKF LKEEMGVTKI RFDQDCGIGV 200
KPVSREGTKR LVRKALQYVV DNDRESLTLV HKGNIMKFTE GAFKDWGYEV 250
ARDEFGAELL DGGPWMKFKN PKSGREVIVK DAIADAMLQQ ILLRPAEYDV 300
IATLNLNGDY LSDALAAEVG GIGIAPGANL SDTVAMFEAT HGTAPKYAGQ 350
DKVNPGSVIL SAEMMLRHMG WTEAADLIIK GTNGAIAAKT VTYDFERLMD 400
GATLVSSSGF GDEMIKHM 418
Length:418
Mass (Da):45,645
Last modified:September 21, 2011 - v1
Checksum:iA0F3056014634DBC
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002870 Genomic DNA. Translation: AEJ13968.1.
RefSeqiYP_004702848.1. NC_015733.1.

Genome annotation databases

EnsemblBacteriaiAEJ13968; AEJ13968; PPS_3421.
GeneIDi10939051.
KEGGippt:PPS_3421.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002870 Genomic DNA. Translation: AEJ13968.1 .
RefSeqi YP_004702848.1. NC_015733.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEJ13968 ; AEJ13968 ; PPS_3421 .
GeneIDi 10939051.
KEGGi ppt:PPS_3421.

Phylogenomic databases

KOi K00031.

Enzyme and pathway databases

BioCyci PPUT1042876:GH0R-3379-MONOMER.

Family and domain databases

Gene3Di 3.40.718.10. 1 hit.
InterProi IPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR004439. Isocitrate_DH_NADP_dimer_prok.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view ]
PANTHERi PTHR11835. PTHR11835. 1 hit.
Pfami PF00180. Iso_dh. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00183. prok_nadp_idh. 1 hit.
PROSITEi PS00470. IDH_IMDH. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16."
    Yu H., Tang H., Wang L., Yao Y., Wu G., Xu P.
    J. Bacteriol. 193:5541-5542(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S16Imported.

Entry informationi

Entry nameiF8G5R9_PSEPU
AccessioniPrimary (citable) accession number: F8G5R9
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: September 3, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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