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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

PPS_4150

Organism
Pseudomonas putida (strain S16)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT1042876:GH0R-4100-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:PPS_4150Imported
OrganismiPseudomonas putida (strain S16)Imported
Taxonomic identifieri1042876 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000502 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF8G205.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8G205-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAFAELYLR LDATTSSTAK LTALREYFST APAGDAAWAV YFLAGGRPRQ
60 70 80 90 100
LVPTRVLREL AGRLAGLPDW LFEECYQAVG DLAETISLLV PESHHPGGDG
110 120 130 140 150
LARWVEAHLL PLRGLPVEEI QQRLPPLWAQ LDRPSLMLCL KLITGSFRVG
160 170 180 190 200
VSKLLVTRAL AQLAGLDAKR VAQRLVGYTD ISHRPTAASY QRLIAPESDD
210 220 230 240 250
EHSLRGGQPY PFFLAHPLQV STEQLDTLLG PPSEWQIEWK WDGIRNQVVK
260 270 280 290 300
REGQLWVWSR GEELVTERFP ELHSLAQTLP DGVVLDGEIL VWKPGGSAAE
310 320 330 340 350
LAVQPFALLQ QRLGRKTLGK KLLSDAPVVL QAYDLLEWQG EDWRSRPQHA
360 370 380 390 400
RRQQLEQVLE QHPLAPVLLS PLLEGQDWTD LARQREQSRS LGVEGLMLKQ
410 420 430 440 450
REALYGVGRT KDMGTWWKWK IDPFSVDAVL IYAQRGHGRR ASLYSDYTFA
460 470 480 490 500
VWDAPAGTPG RALVPFAKAY SGLSDEEMRK VDAIIRKTTV ETFGPVRSVT
510 520 530 540 550
PTLVFELGFE GIALSRRHKS GIAVRFPRML RWRLDKPVEE ADDLATLQAL

LA
Length:552
Mass (Da):61,903
Last modified:September 20, 2011 - v1
Checksum:i28B08D0529AFADF5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002870 Genomic DNA. Translation: AEJ14689.1.
RefSeqiYP_004703569.1. NC_015733.1.

Genome annotation databases

EnsemblBacteriaiAEJ14689; AEJ14689; PPS_4150.
GeneIDi10939772.
KEGGippt:PPS_4150.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002870 Genomic DNA. Translation: AEJ14689.1.
RefSeqiYP_004703569.1. NC_015733.1.

3D structure databases

ProteinModelPortaliF8G205.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEJ14689; AEJ14689; PPS_4150.
GeneIDi10939772.
KEGGippt:PPS_4150.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciPPUT1042876:GH0R-4100-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16."
    Yu H., Tang H., Wang L., Yao Y., Wu G., Xu P.
    J. Bacteriol. 193:5541-5542(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S16Imported.

Entry informationi

Entry nameiF8G205_PSEP6
AccessioniPrimary (citable) accession number: F8G205
Entry historyi
Integrated into UniProtKB/TrEMBL: September 20, 2011
Last sequence update: September 20, 2011
Last modified: March 3, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.