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Protein
Submitted name:

Hemolysin III family channel protein

Gene

PPS_4830

Organism
Pseudomonas putida (strain S16)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciPPUT1042876:GH0R-4770-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Hemolysin III family channel proteinImported
Gene namesi
ORF Names:PPS_4830Imported
OrganismiPseudomonas putida (strain S16)Imported
Taxonomic identifieri1042876 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000502 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei12 – 3120HelicalSequence analysisAdd
BLAST
Transmembranei37 – 5519HelicalSequence analysisAdd
BLAST
Transmembranei76 – 9419HelicalSequence analysisAdd
BLAST
Transmembranei125 – 14319HelicalSequence analysisAdd
BLAST
Transmembranei155 – 17420HelicalSequence analysisAdd
BLAST
Transmembranei186 – 20419HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi1042876.PPS_4830.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4108UT2. Bacteria.
COG1272. LUCA.
KOiK11068.

Family and domain databases

InterProiIPR004254. AdipoR/HlyIII-related.
IPR005744. Hy-lIII.
[Graphical view]
PANTHERiPTHR20855. PTHR20855. 1 hit.
PTHR20855:SF3. PTHR20855:SF3. 1 hit.
PfamiPF03006. HlyIII. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01065. hlyIII. 1 hit.

Sequencei

Sequence statusi: Complete.

F8FVB8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYYGERFNAW THLVGAVLAC IGAIWLIVVA GLQGDPWKIV SFSIYGSTLL
60 70 80 90 100
LLYSISTLYH STRGRAKVIM RKLDHLSIYL LIAGSYTPFC LVSLRGPWGW
110 120 130 140 150
SLFGVVWGLA VIGMLQEIKP RSEARILSII IYAVMGWIVL VAVKPLLHSL
160 170 180 190 200
GSAGFAWLAA GGVFYTVGII FFAFDSRFRH WHGIWHLFVI AGSLMHFVAV

SFYVR
Length:205
Mass (Da):22,928
Last modified:September 21, 2011 - v1
Checksum:i39D7DA13FB8FFD49
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002870 Genomic DNA. Translation: AEJ15359.1.
RefSeqiWP_013974522.1. NC_015733.1.

Genome annotation databases

EnsemblBacteriaiAEJ15359; AEJ15359; PPS_4830.
KEGGippt:PPS_4830.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002870 Genomic DNA. Translation: AEJ15359.1.
RefSeqiWP_013974522.1. NC_015733.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1042876.PPS_4830.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEJ15359; AEJ15359; PPS_4830.
KEGGippt:PPS_4830.

Phylogenomic databases

eggNOGiENOG4108UT2. Bacteria.
COG1272. LUCA.
KOiK11068.

Enzyme and pathway databases

BioCyciPPUT1042876:GH0R-4770-MONOMER.

Family and domain databases

InterProiIPR004254. AdipoR/HlyIII-related.
IPR005744. Hy-lIII.
[Graphical view]
PANTHERiPTHR20855. PTHR20855. 1 hit.
PTHR20855:SF3. PTHR20855:SF3. 1 hit.
PfamiPF03006. HlyIII. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01065. hlyIII. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiF8FVB8_PSEP6
AccessioniPrimary (citable) accession number: F8FVB8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: March 16, 2016
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.