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F8FV15

- F8FV15_PSEPU

UniProt

F8FV15 - F8FV15_PSEPU

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
PPS_2715
Organism
Pseudomonas putida S16
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT1042876:GH0R-2677-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:PPS_2715Imported
OrganismiPseudomonas putida S16Imported
Taxonomic identifieri1042876 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000502: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8FV15-1 [UniParc]FASTAAdd to Basket

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MAKPLQEYAR KRDFNATPEP SGKRSRGKRA HALQFCIQKH DASHLHYDFR    50
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA 100
GDVIVWDRGI WEPEGDAHEA YAKGKLRFRL QGEKLGGVWN LFRTHLAGKK 150
EQWMLVKSHD SQARSEADYS IVDAQPDSVL SDRTLVPRKP TAKKAAAPRR 200
KAASKGRKVP LPAQLQPQLA TLVDSPPSGD WRYEVKFDGY RILARIDGDD 250
VRLFTRNGHD WSGKMPRQVA ALRALGLDSA WLDGEVVVAG ENGAADFQAL 300
QNAFDTEHDE HITYYLFDLP FLGSQDLRQL PLQDRRDTLQ RLLEHNESDV 350
LKYSDDFDQP VESLLDSACR LQLEGLIGKR VDSPYSGRRS PDWIKLKCKQ 400
RQEFVIVGYT DPKGSRSGFG ALLLALHDND SGELRYAGKV GTGFSATTLA 450
SIHARLKPLE TAKPALPNPP TGAEARGVHW LKPQLLAEVA YAQMTRDGIV 500
RHSVFHGLRD DKPATAIDLE RSMPAKTLPK RKQAKAPEAL GELRLTHPKR 550
VVDATSGVTK REVAEYYAAV SQWILPQLKN RPVALVRAPD GLAGELFFQK 600
NAGQLHLPNV LSYDKAEAGQ AAMVINRADT LIGAVQMNML ELHTWNATDK 650
DFDKPDRFVL DLDPDPALPW KAMLEATQLA LTLLDELGLK VFLKTSGGKG 700
MHLVVPLTRR ASWDEVKAFS HGIVDYLARL FPDRLSAVSG PKNRIGRIFI 750
DYLRNGKGAT TACAYTLRAR EGLPVSVPIW REELPQLKGA NQWNIGNVLE 800
RLGDVDDPWA DYGKTRQSIT VGMRKQLGLA 830
Length:830
Mass (Da):92,569
Last modified:September 21, 2011 - v1
Checksum:i5B22CB6B24EC9936
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002870 Genomic DNA. Translation: AEJ13266.1.
RefSeqiWP_013972632.1. NC_015733.1.
YP_004702146.1. NC_015733.1.

Genome annotation databases

EnsemblBacteriaiAEJ13266; AEJ13266; PPS_2715.
GeneIDi10938349.
KEGGippt:PPS_2715.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002870 Genomic DNA. Translation: AEJ13266.1 .
RefSeqi WP_013972632.1. NC_015733.1.
YP_004702146.1. NC_015733.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEJ13266 ; AEJ13266 ; PPS_2715 .
GeneIDi 10938349.
KEGGi ppt:PPS_2715.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PPUT1042876:GH0R-2677-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16."
    Yu H., Tang H., Wang L., Yao Y., Wu G., Xu P.
    J. Bacteriol. 193:5541-5542(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S16Imported.

Entry informationi

Entry nameiF8FV15_PSEPU
AccessioniPrimary (citable) accession number: F8FV15
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: September 3, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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