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F8FV15

- F8FV15_PSEP6

UniProt

F8FV15 - F8FV15_PSEP6

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

PPS_2715

Organism
Pseudomonas putida (strain S16)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT1042876:GH0R-2677-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:PPS_2715Imported
OrganismiPseudomonas putida (strain S16)Imported
Taxonomic identifieri1042876 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000502: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8FV15-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MAKPLQEYAR KRDFNATPEP SGKRSRGKRA HALQFCIQKH DASHLHYDFR
60 70 80 90 100
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA
110 120 130 140 150
GDVIVWDRGI WEPEGDAHEA YAKGKLRFRL QGEKLGGVWN LFRTHLAGKK
160 170 180 190 200
EQWMLVKSHD SQARSEADYS IVDAQPDSVL SDRTLVPRKP TAKKAAAPRR
210 220 230 240 250
KAASKGRKVP LPAQLQPQLA TLVDSPPSGD WRYEVKFDGY RILARIDGDD
260 270 280 290 300
VRLFTRNGHD WSGKMPRQVA ALRALGLDSA WLDGEVVVAG ENGAADFQAL
310 320 330 340 350
QNAFDTEHDE HITYYLFDLP FLGSQDLRQL PLQDRRDTLQ RLLEHNESDV
360 370 380 390 400
LKYSDDFDQP VESLLDSACR LQLEGLIGKR VDSPYSGRRS PDWIKLKCKQ
410 420 430 440 450
RQEFVIVGYT DPKGSRSGFG ALLLALHDND SGELRYAGKV GTGFSATTLA
460 470 480 490 500
SIHARLKPLE TAKPALPNPP TGAEARGVHW LKPQLLAEVA YAQMTRDGIV
510 520 530 540 550
RHSVFHGLRD DKPATAIDLE RSMPAKTLPK RKQAKAPEAL GELRLTHPKR
560 570 580 590 600
VVDATSGVTK REVAEYYAAV SQWILPQLKN RPVALVRAPD GLAGELFFQK
610 620 630 640 650
NAGQLHLPNV LSYDKAEAGQ AAMVINRADT LIGAVQMNML ELHTWNATDK
660 670 680 690 700
DFDKPDRFVL DLDPDPALPW KAMLEATQLA LTLLDELGLK VFLKTSGGKG
710 720 730 740 750
MHLVVPLTRR ASWDEVKAFS HGIVDYLARL FPDRLSAVSG PKNRIGRIFI
760 770 780 790 800
DYLRNGKGAT TACAYTLRAR EGLPVSVPIW REELPQLKGA NQWNIGNVLE
810 820 830
RLGDVDDPWA DYGKTRQSIT VGMRKQLGLA
Length:830
Mass (Da):92,569
Last modified:September 21, 2011 - v1
Checksum:i5B22CB6B24EC9936
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002870 Genomic DNA. Translation: AEJ13266.1.
RefSeqiYP_004702146.1. NC_015733.1.

Genome annotation databases

EnsemblBacteriaiAEJ13266; AEJ13266; PPS_2715.
GeneIDi10938349.
KEGGippt:PPS_2715.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002870 Genomic DNA. Translation: AEJ13266.1 .
RefSeqi YP_004702146.1. NC_015733.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEJ13266 ; AEJ13266 ; PPS_2715 .
GeneIDi 10938349.
KEGGi ppt:PPS_2715.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PPUT1042876:GH0R-2677-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16."
    Yu H., Tang H., Wang L., Yao Y., Wu G., Xu P.
    J. Bacteriol. 193:5541-5542(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S16Imported.

Entry informationi

Entry nameiF8FV15_PSEP6
AccessioniPrimary (citable) accession number: F8FV15
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: October 29, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3