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F8FV15

- F8FV15_PSEP6

UniProt

F8FV15 - F8FV15_PSEP6

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

PPS_2715

Organism
Pseudomonas putida (strain S16)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (21 Sep 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPPUT1042876:GH0R-2677-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    ORF Names:PPS_2715Imported
    OrganismiPseudomonas putida (strain S16)Imported
    Taxonomic identifieri1042876 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000000502: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F8FV15-1 [UniParc]FASTAAdd to Basket

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    MAKPLQEYAR KRDFNATPEP SGKRSRGKRA HALQFCIQKH DASHLHYDFR    50
    LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA 100
    GDVIVWDRGI WEPEGDAHEA YAKGKLRFRL QGEKLGGVWN LFRTHLAGKK 150
    EQWMLVKSHD SQARSEADYS IVDAQPDSVL SDRTLVPRKP TAKKAAAPRR 200
    KAASKGRKVP LPAQLQPQLA TLVDSPPSGD WRYEVKFDGY RILARIDGDD 250
    VRLFTRNGHD WSGKMPRQVA ALRALGLDSA WLDGEVVVAG ENGAADFQAL 300
    QNAFDTEHDE HITYYLFDLP FLGSQDLRQL PLQDRRDTLQ RLLEHNESDV 350
    LKYSDDFDQP VESLLDSACR LQLEGLIGKR VDSPYSGRRS PDWIKLKCKQ 400
    RQEFVIVGYT DPKGSRSGFG ALLLALHDND SGELRYAGKV GTGFSATTLA 450
    SIHARLKPLE TAKPALPNPP TGAEARGVHW LKPQLLAEVA YAQMTRDGIV 500
    RHSVFHGLRD DKPATAIDLE RSMPAKTLPK RKQAKAPEAL GELRLTHPKR 550
    VVDATSGVTK REVAEYYAAV SQWILPQLKN RPVALVRAPD GLAGELFFQK 600
    NAGQLHLPNV LSYDKAEAGQ AAMVINRADT LIGAVQMNML ELHTWNATDK 650
    DFDKPDRFVL DLDPDPALPW KAMLEATQLA LTLLDELGLK VFLKTSGGKG 700
    MHLVVPLTRR ASWDEVKAFS HGIVDYLARL FPDRLSAVSG PKNRIGRIFI 750
    DYLRNGKGAT TACAYTLRAR EGLPVSVPIW REELPQLKGA NQWNIGNVLE 800
    RLGDVDDPWA DYGKTRQSIT VGMRKQLGLA 830
    Length:830
    Mass (Da):92,569
    Last modified:September 21, 2011 - v1
    Checksum:i5B22CB6B24EC9936
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002870 Genomic DNA. Translation: AEJ13266.1.
    RefSeqiWP_013972632.1. NC_015733.1.
    YP_004702146.1. NC_015733.1.

    Genome annotation databases

    EnsemblBacteriaiAEJ13266; AEJ13266; PPS_2715.
    GeneIDi10938349.
    KEGGippt:PPS_2715.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002870 Genomic DNA. Translation: AEJ13266.1 .
    RefSeqi WP_013972632.1. NC_015733.1.
    YP_004702146.1. NC_015733.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEJ13266 ; AEJ13266 ; PPS_2715 .
    GeneIDi 10938349.
    KEGGi ppt:PPS_2715.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci PPUT1042876:GH0R-2677-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16."
      Yu H., Tang H., Wang L., Yao Y., Wu G., Xu P.
      J. Bacteriol. 193:5541-5542(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S16Imported.

    Entry informationi

    Entry nameiF8FV15_PSEP6
    AccessioniPrimary (citable) accession number: F8FV15
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 21, 2011
    Last sequence update: September 21, 2011
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3