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F8FV15 (F8FV15_PSEPU) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:PPS_2715 EMBL AEJ13266.1
OrganismPseudomonas putida S16 [Complete proteome] EMBL AEJ13266.1
Taxonomic identifier1042876 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length830 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEJ13266.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F8FV15 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 5B22CB6B24EC9936

FASTA83092,569
        10         20         30         40         50         60 
MAKPLQEYAR KRDFNATPEP SGKRSRGKRA HALQFCIQKH DASHLHYDFR LELDGTLKSW 

        70         80         90        100        110        120 
AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA GDVIVWDRGI WEPEGDAHEA 

       130        140        150        160        170        180 
YAKGKLRFRL QGEKLGGVWN LFRTHLAGKK EQWMLVKSHD SQARSEADYS IVDAQPDSVL 

       190        200        210        220        230        240 
SDRTLVPRKP TAKKAAAPRR KAASKGRKVP LPAQLQPQLA TLVDSPPSGD WRYEVKFDGY 

       250        260        270        280        290        300 
RILARIDGDD VRLFTRNGHD WSGKMPRQVA ALRALGLDSA WLDGEVVVAG ENGAADFQAL 

       310        320        330        340        350        360 
QNAFDTEHDE HITYYLFDLP FLGSQDLRQL PLQDRRDTLQ RLLEHNESDV LKYSDDFDQP 

       370        380        390        400        410        420 
VESLLDSACR LQLEGLIGKR VDSPYSGRRS PDWIKLKCKQ RQEFVIVGYT DPKGSRSGFG 

       430        440        450        460        470        480 
ALLLALHDND SGELRYAGKV GTGFSATTLA SIHARLKPLE TAKPALPNPP TGAEARGVHW 

       490        500        510        520        530        540 
LKPQLLAEVA YAQMTRDGIV RHSVFHGLRD DKPATAIDLE RSMPAKTLPK RKQAKAPEAL 

       550        560        570        580        590        600 
GELRLTHPKR VVDATSGVTK REVAEYYAAV SQWILPQLKN RPVALVRAPD GLAGELFFQK 

       610        620        630        640        650        660 
NAGQLHLPNV LSYDKAEAGQ AAMVINRADT LIGAVQMNML ELHTWNATDK DFDKPDRFVL 

       670        680        690        700        710        720 
DLDPDPALPW KAMLEATQLA LTLLDELGLK VFLKTSGGKG MHLVVPLTRR ASWDEVKAFS 

       730        740        750        760        770        780 
HGIVDYLARL FPDRLSAVSG PKNRIGRIFI DYLRNGKGAT TACAYTLRAR EGLPVSVPIW 

       790        800        810        820        830 
REELPQLKGA NQWNIGNVLE RLGDVDDPWA DYGKTRQSIT VGMRKQLGLA 

« Hide

References

[1]"Complete Genome Sequence of the Nicotine-Degrading Pseudomonas putida Strain S16."
Yu H., Tang H., Wang L., Yao Y., Wu G., Xu P.
J. Bacteriol. 193:5541-5542(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: S16 EMBL AEJ13266.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002870 Genomic DNA. Translation: AEJ13266.1.
RefSeqYP_004702146.1. NC_015733.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEJ13266; AEJ13266; PPS_2715.
GeneID10938349.
KEGGppt:PPS_2715.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycPPUT1042876:GH0R-2677-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF8FV15_PSEPU
AccessionPrimary (citable) accession number: F8FV15
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 16, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)