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F8FA29 (F8FA29_PAEMK) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
30S ribosomal protein S5 HAMAP-Rule MF_01307
Gene names
Name:rpsE HAMAP-Rule MF_01307 EMBL AEI46002.1
Ordered Locus Names:KNP414_07508 EMBL AEI46002.1
OrganismPaenibacillus mucilaginosus (strain KNP414) [Complete proteome] [HAMAP]
Taxonomic identifier1036673 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Paenibacillaceae › Paenibacillus ›

Protein attributes

Sequence length165 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307

With S4 and S12 plays an important role in translational accuracy By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307

Subunit structure

Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 By similarity. SAAS SAAS005712 HAMAP-Rule MF_01307

Domain

The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity By similarity. HAMAP-Rule MF_01307

Sequence similarities

Belongs to the ribosomal protein S5P family. RuleBase RU003823 HAMAP-Rule MF_01307

Contains 1 S5 DRBM domain. SAAS SAAS005712 HAMAP-Rule MF_01307

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain10 – 7364S5 DRBM By similarity HAMAP-Rule MF_01307

Sequences

Sequence LengthMass (Da)Tools
F8FA29 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 42551CFA1470854A

FASTA16517,169
        10         20         30         40         50         60 
MRIDPNTLEL SEKVVQINRV AKVVKGGRRF SFSALVVVGD GNGWVGAGIG KASEVPDAIR 

        70         80         90        100        110        120 
KGIEDAKKNL IHVPIVGTTI PHLVTGKFGA GQVLLKPASK GTGVIAGGPV RAVLELAGVG 

       130        140        150        160 
DILTKSLGSS NSMNMVNATL EGLQRLKRAE DVAKLRGKTV EELLG

« Hide

References

[1]"Complete genome sequence of Paenibacillus mucilaginosus KNP414."
Wang J., Hu S., Hu X., Zhang B., Dong D., Zhang S., Zhao K., Wu D.
Submitted (JUN-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KNP414 EMBL AEI46002.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002869 Genomic DNA. Translation: AEI46002.1.
RefSeqYP_004645872.1. NC_015690.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEI46002; AEI46002; KNP414_07508.
GeneID10860387.
KEGGpms:KNP414_07508.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02988.

Enzyme and pathway databases

BioCycPMUC1036673:GJD1-7511-MONOMER.

Family and domain databases

Gene3D3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPMF_01307_B. Ribosomal_S5_B.
InterProIPR014720. dsRNA-bd-like_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view]
PANTHERPTHR13718. PTHR13718. 1 hit.
PfamPF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]
SUPFAMSSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMsTIGR01021. rpsE_bact. 1 hit.
PROSITEPS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF8FA29_PAEMK
AccessionPrimary (citable) accession number: F8FA29
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 3, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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