F8EZP1 (F8EZP1_SPICH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

Spica_2668 EMBL AEJ20765.1

Organism

Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) [Complete proteome] [HAMAP]

Taxonomic identifier

744872 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Spirochaetes › Spirochaetia › Spirochaetales › Spirochaetaceae › Spirochaeta › Spirochaeta caldaria

Protein attributes

Sequence length	235 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F8EZP1 [UniParc]. Last modified September 21, 2011. Version 1. Checksum: 8258AD9A4C32547E	FASTA	235	26,462
	10 20 30 40 50 60 MKRTTGKEQQ RPWRLPFGLE ILYEDDDIMV VFKPEGLLSV AAGGEKNRTA YWILNEYLRR 70 80 90 100 110 120 RGQKRQIAVV HRLDRDTSGV MVFAKSAVMK KVLMDRWDDL VAARRYVAVV EGSVTEAEGT 130 140 150 160 170 180 IDLPLTEDSR ARVVIAPPGK GLRAVTRWKL LRSGSRYSML ALELETGRRN QIRVHCAAIG 190 200 210 220 230 HPVVGDSKYG SRSDPLGRLG LHAETLAFHH PRTGAPLEFS VPPPPSFTSP KLYRY

References

[1]

"The complete genome of Spirochaeta caldaria DSM 7334." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Han J., Lapidus A., Bruce D., Goodwin L., Pitluck S., Peters L., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Lu M., Misra M., Detter J.C., Tapia R., Han C., Land M., Hauser L. , Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Spring S., Schroeder M., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (JUN-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51460 / DSM 7334 / H1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002868 Genomic DNA. Translation: AEJ20765.1.
RefSeq	YP_004699273.1. NC_015732.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEJ20765; AEJ20765; Spica_2668.
GeneID	10948097.
KEGG	scd:Spica_2668.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K06180.
Enzyme and pathway databases
BioCyc	SCAL744872:GHIK-2725-MONOMER.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F8EZP1_SPICH

Accession

Primary (citable) accession number: F8EZP1

Entry history

Integrated into UniProtKB/TrEMBL:	September 21, 2011
Last sequence update:	September 21, 2011
Last modified:	April 3, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)