Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

F8EN42 (F8EN42_RUNSL) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein attributes

Sequence length556 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. SAAS SAAS005905

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. SAAS SAAS005905

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. SAAS SAAS005905

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. SAAS SAAS005905

Subcellular location

Cytoplasm By similarity SAAS SAAS005905.

Sequence similarities

Contains ATP-grasp domain. SAAS SAAS005905

Sequences

Sequence LengthMass (Da)Tools
F8EN42 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 4E44F7725A539D38

FASTA55662,244
        10         20         30         40         50         60 
MRIGIFFGGP AREREISYAG GKTAYENMDK ALFTPVLVFV DSLGNFILTD ESTLYHSGIR 

        70         80         90        100        110        120 
AFYPGPAFRE GGFEVYIESL QQQLSPAELE ALMHGIGTPI QPQDFKKYFD FAFIILHGPD 

       130        140        150        160        170        180 
CEDGAIQGLM EWHKMPYMGP GLLGSAVSID KILQNEQIAR ANGQEKKMAV VRWEEWHGAD 

       190        200        210        220        230        240 
ISQKFEEAKA AVGLPIVVKA PHQGSSIGVA IVKEDSADAF AKAVNQCFFS LEIRADDWRS 

       250        260        270        280        290        300 
WSEAEKHTFA QRIGNLDESI GYPVVIQETQ ETIYHPLDLL DKLDASLHSS FTLLSINAED 

       310        320        330        340        350        360 
QVLLEEFMTG QEFSCGVIQD NDGTVIALPP TEIAKMDENQ TFDFKTKYKL NVTRKFIPVR 

       370        380        390        400        410        420 
TALENNQKIQ YNIALVFEKL GMNAVARIDG FLTPDGRVLL HDPNTLPGMS PTSLIFKQMA 

       430        440        450        460        470        480 
EIGLDVTHAI TYLIRQSLRE RIRTGKDTIH LRKLLSTLDA DIAQKLAERT LQNVEFEATT 

       490        500        510        520        530        540 
EAYMEARRTF SQLSASGKVK PTAVLKISDD EKHELPVGLL FKDTIEDVLE MVAQPVHPLI 

       550 
TETREKAKNI TRRFVG 

« Hide

References

[1]"The complete genome of chromosome of Runella slithyformis DSM 19594."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Han J., Lapidus A., Bruce D., Goodwin L., Pitluck S., Peters L., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Zhang X., Misra M., Detter J.C., Tapia R., Han C., Land M., Hauser L. expand/collapse author list , Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindall B., Faehrich R., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (JUN-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002859 Genomic DNA. Translation: AEI49539.1.
RefSeqYP_004656671.1. NC_015703.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEI49539; AEI49539; Runsl_3158.
GeneID10871690.
KEGGrsi:Runsl_3158.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01921.

Enzyme and pathway databases

BioCycRSLI761193:GHKZ-3181-MONOMER.
UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 2 hits.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view]
SUPFAMSSF52440. SSF52440. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
PS00843. DALA_DALA_LIGASE_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF8EN42_RUNSL
AccessionPrimary (citable) accession number: F8EN42
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: October 16, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)