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F8DSK8 (F8DSK8_ZYMMA) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length349 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. RuleBase RU004188 HAMAP-Rule MF_01201

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site361Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2471Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1301Substrate By similarity HAMAP-Rule MF_01201
Binding site2951Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue361N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
F8DSK8 [UniParc].

Last modified September 21, 2011. Version 1.
Checksum: 9A1B1F286508021C

FASTA34938,079
        10         20         30         40         50         60 
MQISSPLRLE LDKSALMANW QSLNRITAGH CGAAIKANGY GLGAERVRHY LAQAGCRDFF 

        70         80         90        100        110        120 
VSSWDEARLL DSSEKDFSLS VLHGLREDDL GYALNSSVKP VLCSPAMIAR WKAHAPNRPC 

       130        140        150        160        170        180 
DVMVDTGMNR LGLSMEEAGS GLLDGLSIDN ILSHLACADE ADHPLNQKQL ERFRILAARK 

       190        200        210        220        230        240 
QAKRYSLANS AGIFLSKDYH FDLARPGLAL YGGLPVPQSK DILKPVVAIA AQAIQVREVS 

       250        260        270        280        290        300 
AGEAIGYGAC FVTPKKMRVA ILHVGYADGY WRAFFEKGHA RKDGVICPLA GRVSMDMITV 

       310        320        330        340 
ALPDALTAQE GDWFSVDFDL PSASQQTGLS QYELLTGLGH RYQSVWQAI 

« Hide

References

[1]"Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988."
Pappas K.M., Kouvelis V.N., Saunders E., Brettin T.S., Bruce D., Detter C., Balakireva M., Han C.S., Savvakis G., Kyrpides N.C., Typas M.A.
J. Bacteriol. 193:5051-5052(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 10988 / DSM 424 / LMG 404 / NCIMB 8938 / NRRL B-806 / ZM1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002850 Genomic DNA. Translation: AEH63358.1.
RefSeqYP_005621809.1. NC_017262.1.

3D structure databases

ProteinModelPortalF8DSK8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEH63358; AEH63358; Zmob_1543.
GeneID12281996.
KEGGzmm:Zmob_1543.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01775.
OMAPAGVCWR.

Enzyme and pathway databases

BioCycZMOB555217:GLMZ-1589-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF8DSK8_ZYMMA
AccessionPrimary (citable) accession number: F8DSK8
Entry history
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: July 9, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)