Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase

Gene

LILAB_05755

Organism
Myxococcus fulvus (strain ATCC BAA-855 / HW-1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. zinc ion binding Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMFUL483219:GJEO-1143-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:LILAB_05755Imported
OrganismiMyxococcus fulvus (strain ATCC BAA-855 / HW-1)Imported
Taxonomic identifieri483219 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeMyxococcaceaeMyxococcus
ProteomesiUP000000488 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR007527. Znf_SWIM.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50966. ZF_SWIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F8CR28-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADIADGEQV SVKGSGAKPY ILKNTGGVYS CSCPAWRNQS VAIERRTCKH
60 70 80 90 100
LRRVRGDAAE DARIGGDATT APARPARTPS ASDDSKAPPL LLAQSWENDV
110 120 130 140 150
DLTGWWMSEK LDGVRAYWDG KQFWSRLGNA FLAPEWFTAG LPDFPLDGEL
160 170 180 190 200
FGGRKRFQRT VSIVRRQDRG DDWKELAFVV FDAPGVDGAF EARLERCRQW
210 220 230 240 250
MEEAKPAYAQ WHAHARCDGT PHLRAELARV EGLGGEGLML RQPGSRYEAG
260 270 280 290 300
RSHTLLKVKS FKDDEARVVG HVPGAGRHKG RLGALEVELR DGTRFNVGTG
310 320 330 340
LSDAERAAPP PVGAIITFRY QELSNDGVPR FPSYVGVRVD AAPFAAS
Length:347
Mass (Da):38,117
Last modified:September 21, 2011 - v1
Checksum:iDB64E39BC08D5B8D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002830 Genomic DNA. Translation: AEI63072.1.
RefSeqiYP_004664150.1. NC_015711.1.

Genome annotation databases

EnsemblBacteriaiAEI63072; AEI63072; LILAB_05755.
KEGGimfu:LILAB_05755.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002830 Genomic DNA. Translation: AEI63072.1.
RefSeqiYP_004664150.1. NC_015711.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEI63072; AEI63072; LILAB_05755.
KEGGimfu:LILAB_05755.

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Enzyme and pathway databases

BioCyciMFUL483219:GJEO-1143-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR007527. Znf_SWIM.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50966. ZF_SWIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the halotolerant marine bacterium Myxococcus fulvus HW-1."
    Li Z.F., Li X., Liu H., Liu X., Han K., Wu Z.H., Hu W., Li F.F., Li Y.Z.
    J. Bacteriol. 193:5015-5016(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-855 / HW-1Imported.

Entry informationi

Entry nameiF8CR28_MYXFH
AccessioniPrimary (citable) accession number: F8CR28
Entry historyi
Integrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: April 29, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.